XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TGTCTTCTGCATGAAGCCTTATGAGTTAGAAGGATGCACACACATAAATA
TTTCACTGGTGCAAGCACTCCTGCTCCCTGATTCTCCCATATTGATTACC
ACTAATCTATCCCTTATGTCACTTTCCATTCCTGTGGAAATAAGATAGGT
ATGTGCCTGGAATAAATAGCCTTCTCCCCATTTGGAAACAGTGCAGAGTC
TAGAGCACATTACAACCTTCCCTATAATGGAAGTACCCACACGCTGGCAA
TTGCTGTCTACAGACGTAATGAACCAAGTGGGAGGTAATGAGAAGTGACT
GTCACGCCATCTCTGGGGCCCAGTTTCTCCTGCTGCACAATTACACTGTG
ACCCCAGAGAAACCGACAAGAGTGCAACATTCTTTCCTTTTCTAATGATC
TTAAAATCAGCCTTAGCTTATGGAATGCGTGTGGAGGGGCGCAAGCAGCA
GCATCACCCATTTGGCAGCCCAGAGGCTGTGCGGGGGAGGAGGGGGTCGG
GGCGGGGGGAGTGTATGCTTGCAGCAGAGAGGAAGCTGTCTGTCCGTATA
GTTCTGCTTTTGTCCCAGTGAAGACTTGGTCTCTGGCTGGAATGATGCCA
GCTAACCGGAGGCTCCTTTCCTACTTTCCCTGGTGCATCTTTGGAGCCGG
TTACTCGTTACTTCTAGAAGCG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCACTTATGGTAATTGA
GAGTTTTGCTGGGTATAGTACCCTGGGCTGGTATTTGTGTTCTCTTAGGG
TCTGCATAACATCTATCCAGGATCTTCTGGCTTTCATAGTCTCTGGTGAG
AAGTCTGGAGTACTTCTAATAGCCCTGCCTTTACATGTTACTTGACCTTT
TTCCCTTACTGCTTTTAATATTCTATCTTTATTTAGTGAATTTGTTGTTC
TGATTATTATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATAGTTC
TATAGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTATGTTTGGGAAG
TTTTCTTCTATAATCCCCGCCGAAGATATTTGCTGGCCCTTTAGGTTGAA
AATCTTCATTCTCATCTACTCCTATTATCTGTAGGTTTGGTCTTCTCATT
GAGTCCTGAATTTCCTGAATGTTTTGAGTTAGGATCTTTTTGCATTTTGC
ATTTTCTTTGATTGTTGTGTCCCTGTTCTCTATGGAATCTTCTGCATCTG
AGATTCTCTCTTCCATCTCTTGTATTTTGTTGCTGATGCTCACATCTATG
GTTCCTGATTTCTTTCCTAGGGTTTCTATCTCCAGAGTTGTCTCCTTTTG
GGTTTTTTTTTTCATTATTTCT

Query= MSMg01no315_b12.b1 MSMg01no315_b12.b1 CHROMAT_FILE:
MSMg01no315_b12.b1 PHD_FILE: MSMg01no315_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:28 2005
         (682 letters)



>mm_chr3_133416698_133417779
          Length = 1082

 Score = 1237 bits (640), Expect = 0.0
 Identities = 667/676 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgtcttctgcatgaagccttatgagttagaaggatgcacacacataaatatttc 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgtcttctgtatgaagccttatgagttagaaggatgcacacacataaatatttc 266

                                                                       
Query: 67  actggtgcaagcactcctgctccctgattctcccatattgattaccactaatctatccct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 actggtgcaagcactcctgctccctgattctcccatattgattaccactaatctatccct 326

                                                                       
Query: 127 tatgtcactttccattcctgtggaaataagataggtatgtgcctggaataaatagccttc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatgtcactttccattcctgtggaaataagataggtatgtgcctggaataaatagccttc 386

                                                                       
Query: 187 tccccatttggaaacagtgcagagtctagagcacattacaaccttccctataatggaagt 246
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccccatttggaaaccgtgcagagtctagagcacattacaaccttccctataatggaagt 446

                                                                       
Query: 247 acccacacgctggcaattgctgtctacagacgtaatgaaccaagtgggaggtaatgagaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acccacacgctggcaattgctgtctacagacgtaatgaaccaagtgggaggtaatgagaa 506

                                                                       
Query: 307 gtgactgtcacgccatctctggggcccagtttctcctgctgcacaattacactgtgaccc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgactgtcacgccatctctggggcccagtttctcctgctgcacaattacactgtgaccc 566

                                                                       
Query: 367 cagagaaaccgacaagagtgcaacattctttccttttctaatgatcttaaaatcagcctt 426
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagagaaactgagaagagtgcaacattctttccttttctaatgatcttaaaatcagcctt 626

                                                                       
Query: 427 agcttatggaatgcgtgtggaggggcgcaagcagcagcatcacccatttggcagcccaga 486
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 627 agcttatggaatgcgtgtggaggggtgcaagcagcagcatcacccatttggcagtccaga 686

                                                                       
Query: 487 ggctgtgcgggggaggagggggtcggggcggggggagtgtatgcttgcagcagagaggaa 546
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggctgtgcgggggaggtgggggtcggggcggggggagtgtatgcttgcagcagagaggaa 746

                                                                       
Query: 547 gctgtctgtccgtatagttctgcttttgtcccagtgaagacttggtctctggctggaatg 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gctgtctgtccgtatagttctgcttttgtcccagtgaagacttggtctctggctggaatg 806

                                                                       
Query: 607 atgccagctaaccggaggctcctttcctactttccctggtgcatctttggagccggttac 666
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atgccagctaacaggaggctcctttcctactttccctggtgcatctttggagccggttac 866

                           
Query: 667 tcgttacttctagaag 682
           | ||||||||||||||
Sbjct: 867 tggttacttctagaag 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)