BAC Information

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BAC

Clone NameMSMg01-316A06
Chromosome3 (Build37)
Map Location 109,034,479 - 109,034,947
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneVav3, Ntng1, LOC100043181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316A06.T7 (MSMg01no316_a06.b1)MSMg01-316A06.TJ (MSMg01no316_a06.g1)
ACCAG436487AG436488
length734728
length of high quality
(start - end)
603 (46 - 648)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no316_a06.b1 PHD_FILE: MSMg01no316_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:40 2005CHROMAT_FILE: MSMg01no316_a06.g1 PHD_FILE: MSMg01no316_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:40 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAGCACAATACCAAAAAAAAATTCCCAAAATGATGACAGAAAGAAAT
CCTGCTGTGCCAGATGCTCACAGAGTAAACAATCGGGTTAGAAGAGAGGA
TCATGGGAAGGAAGAAAAGATGCACAGAACACACGTGGGCGCAACCCTGC
CTGTCCTGAGGGGATTTTGATCCAAAGGAGCTCTTGGAAAGACAAGGAAG
AATTAGGGATAAGCACCAATATGTAAAAAAACAAACAACAAGGCAATCAT
TAACTCCAGGAGAAATAAAAAGTACATTGCTTGGTTAGTGATAATATTAT
AGCCACAACACTAAAACAACTAAATCTAGTTTAATCAAATGTTTATTATA
ATTATATTGAAAGGGGAGAACCACAGGTCAAGGTGAAAATAAACTTAGTG
CAGTTATGATAAAAGGTATCAGTTCACCCAAAAATAGATAAATCTCTAAA
AAGTAATATGATCATTTTTATTTCAGAGATGGAGGTACATACTAGGATAG
CTAAAAGATAATAAAAATTTTACTTGAGGCATTATTAATGGAGTTGGGAA
AATTAGAAAAGGAAAGTGCCAGTTTCTGTTGCAAGCCTTGTAGAATTGTC
TATTTAAACTCCTCATGTGCATTAGCTAAATATAGAGTACATTGATTCCC
GGATTCCGCTGAGACTAGTCTGCGCTTGTGATAG
ACATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGAAAATCATTTCACTTGTTTATTCATATAAAAATAATG
ATATATGCATCTATCCCCTAGCATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCCATCGAGAGGGAGGGGAGA
AGGAGAAAGAGAGAGAGAGAACCAAGTTCCTGCACTTGTGAAACTTCCAT
TATGAAGTAAGGCAGGGCTTATAGGGCTTAAATACACACGGGAAAATCGC
TGATAGCAAATGGTGTGTAGCACAATGAAGAAAAGCAAAACAGCTAAGCC
GATATGGTCAAGGCAAGGACAGTGACAGGAGCAAGGTTCTCTTTTTGTTA
GGTTGGCCCACACCGGCTTCTAACAATGGTGGTGCCCTGGGCAGAGGGGT
GGAAGGGCCCTCTATGCAGGGCAGTGACTCGGAGAGGAAGGCAGGGGAGC
ACTTATCACTTTCTGAGGAACAAAGGAATACAGAAGCCATTGAGGGGCGG
CGATTACGAAGTCAGATTTGTCGCTAGGAACCCCGAGGTCCTAATGAAAG
CTTACTTTTTATTTTACGTTTTAGGAAGCTGAGCAGGGATTCTGAGCAAG
GTTCTGGTGCTTTCTGGTTGTTGCCCCCCTTTGTATTTAATTTTATGTTT
TGCGCTGTTGGACACCTTGTTTTAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_a06.b1 MSMg01no316_a06.b1 CHROMAT_FILE:
MSMg01no316_a06.b1 PHD_FILE: MSMg01no316_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:40 2005
         (603 letters)



>mm_chr3_109033946_109034947
          Length = 1002

 Score =  775 bits (401), Expect = 0.0
 Identities = 447/469 (95%), Gaps = 12/469 (2%)
 Strand = Plus / Minus

                                                                        
Query: 147  caaccctgcctgtcctgaggggattttgatccaaaggagctcttggaaagacaaggaaga 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 caaccctgcctgtcctgaggggattttgatccaaaggagctcttggaaagacaaggaaga 943

                                                                        
Query: 207  attagggataagcaccaatatgt-aaaaaaacaaacaacaaggcaatcattaactccagg 265
            |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 942  attaggaataagcaccaatatgtaaaaaaaacaaacaagaaggcaatcattaactccagg 883

                                                                        
Query: 266  agaaataaaaagtacattgcttggttagtgataatattatagccacaacactaaaacaac 325
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  agaaataaaaagcacattgcttggttagtgataatattatagccacaacactaaaacaac 823

                                                                        
Query: 326  taaatctagttta-----------atcaaatgtttattataattatattgaaaggggaga 374
            |||||||||||||           ||||||||||||||||||||||||||||||||||||
Sbjct: 822  taaatctagtttaatcaaatgtttatcaaatgtttattataattatattgaaaggggaga 763

                                                                        
Query: 375  accacaggtcaaggtgaaaataaacttagtgcagttatgataaaaggtatcagttcaccc 434
            |  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  aagacaggtcaaggtaaaaataaacttagtgcagttatgataaaaggtatcagttcaccc 703

                                                                        
Query: 435  aaaaatagataaatctctaaaaagtaatatgatcatttttatttcagagatggaggtaca 494
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  aaaaatagacaaatctctaaaaagtaatatgatcatttttatttcagagatggaggtaca 643

                                                                        
Query: 495  tactaggatagctaaaagataataaaaattttacttgaggcattattaatggagttggga 554
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 642  tactaggatagctaaaagataataaaatttttacttgaggcattattaatggagttggga 583

                                                             
Query: 555  aaattagaaaaggaaagtgccagtttctgttgcaagccttgtagaattg 603
            || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 582  aagttagaaaaggagagtgccagtttctgttgcaagccttgtagaattg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1002
Length adjustment: 10
Effective length of query: 593
Effective length of database: 992
Effective search space:   588256
Effective search space used:   588256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)