Query= MSMg01no316_h11.b1 MSMg01no316_h11.b1 CHROMAT_FILE:
MSMg01no316_h11.b1 PHD_FILE: MSMg01no316_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:13 2005
(301 letters)
>mm_chr3_81095958_81096658
Length = 701
Score = 524 bits (271), Expect = e-153
Identities = 289/301 (96%), Gaps = 10/301 (3%)
Strand = Plus / Minus
Query: 1 gtttacaaggaaatccactttggaaatgaaaaatgaagctgtatgctgacatttccataa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 gtttacaaggaaatccactttggaaatgaaaaatgaagctgtatgctgacattttcataa 323
Query: 61 cgtgtcagaccagtgtttgagaatatcattaatgtttgagaatatgattataatttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cgtgtcagaccagtgtttgagaatatcattaatgtttgagaatatgattataatttgaag 263
Query: 121 atataattattgattgaaaatatcattaaactcataaaggtgcaaggtttttctactgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atataattattgattgaaaatatcattaaactcataaaggtgcaaggtttttctactgat 203
Query: 181 gtacacacacacacacacacacacacacacacacacatcagtgcaattttttcaaataag 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gt----------acacacacacacacacacacacacatcagtgcaattttttcaaataag 153
Query: 241 tggtgagattgtgttgtagtgtgtgtgtgtgtatgtgtttgaatgaaaacacaactatga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tggtgagattgtgttggagtgtgtgtgtgtgtatgtgtttgaatgaaaacacaactatga 93
Query: 301 a 301
|
Sbjct: 92 a 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_h11.g1 MSMg01no316_h11.g1 CHROMAT_FILE:
MSMg01no316_h11.g1 PHD_FILE: MSMg01no316_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:13 2005
(657 letters)
>mm_chr3_80938443_80939499
Length = 1057
Score = 1185 bits (613), Expect = 0.0
Identities = 647/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Plus
Query: 1 aattatattaataattgtccataatgattctgggcaggaccacaacagctcccatctcct 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 199 aattatattaataattgtccataatgattctgggcaggaccacaagagctcccatctcct 258
Query: 61 gcttccacaagagaaggggaaggaaggctctctgaatttaatttttctgcactgtgcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcttccacaagagaaggggaaggaaggctctctgaatttaatttttctgcactgtgcatg 318
Query: 121 ggccacttcccagagttcttctttactccatttgcaagagtcagccaatg-gcctagggt 179
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 319 ggccaattcccagagttcttctttactccatttgcaagagtcagccaa-gagcctagggt 377
Query: 180 atcctttcttgtttctttagattcaagagaatttttaacttctgtaaatgatggcgtcat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcctttcttgtttctttagattcaagagaatttttaacttctgtaaatgatggcgtcat 437
Query: 240 aacagtaactaaagttctgctttatctcatcaaactcctaagccattgcctagaagtgac 299
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 438 aacagtaacaaaagttctgctttatctcatcaaactcctaagccattgactagaagtgac 497
Query: 300 aactaaggttccaacaacttgctcttgtgaaatgggaagttttatacatatgactaaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aactaaggttccaacaacttgctcttgtgaaatgggaagttttatacatatgactaaatt 557
Query: 360 tgcattgtgtttcaacggtaaccttttgagtaatggtattgagtaatttgactatttaac 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgcattgtgtttcaatggtaaccttttgagtaatggtattgagtaatttgactatttaac 617
Query: 420 ttttccctcagtttttttccaattagagtattatggatagtgtttctcattcacttaaat 479
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 618 ttttccctcagtttttttccaattagagtattatagatagtgtttctcattcacttaaat 677
Query: 480 gtagatatgaaattattttttt--aaaaaaatattttaaatttgtaatggcatgtaatta 537
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtagatatgaaattatttttttttaaaaaaatattttaaatttgtaatggcatgtaatta 737
Query: 538 tttctagttaacaaaaagtaagcatcatgtggctttcccaaaataccaaaattttatctt 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 tttctagttaacaaaaagtaagcatcatgtggctttcccaaaataccagaattttatctt 797
Query: 598 tgattgattcatattatagggcttaatgcattaagttaaataaagtaaaataaatacta 656
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 798 tgattgattcatattatagggcttaatgtattaagttaaataaagtaaaataaatacta 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
