BAC Information

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BAC

Clone NameMSMg01-317N03
Chromosome3 (Build37)
Map Location 48,766,669 - 48,767,314
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317N03.T7 (MSMg01no317_n03.b1)MSMg01-317N03.TJ (MSMg01no317_n03.g1)
ACCAG437784AG437785
length749750
length of high quality
(start - end)
706 (44 - 749)646 (75 - 720)
definitionCHROMAT_FILE: MSMg01no317_n03.b1 PHD_FILE: MSMg01no317_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:52 2005CHROMAT_FILE: MSMg01no317_n03.g1 PHD_FILE: MSMg01no317_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACTGGATCCTGTCCTAGAGAACACTAGATCATGTCTTAGAGACAT
CTCTAATAATAACAATGTAGAGTGTATGGAAAAAGAATATATACAAATTT
CAGGATGCCTATCCAGATAAAACAGGGATATTATACAATTGAAATTTGTT
TTTTTTTTTTTTAAAGAGTTGTGTAAATTACACTATTTCAGGTAATGATC
TCATCTCCTCTTTAGATGTCGTGGAAAGACGTCATAAGAAACAAGGGACT
GTTTTGACATCCTGCTTCCACAGGGGCTCTGTGCCCCACCAGGACCAAGA
ATGCCCTGCCCCGATATTTAATACAGGAAAACTCTTTGGAAAAGAACTGT
GTTCGATTTGTCATGACGCAAAATGGCCCACCGTAATTTGGTAGGTCTCA
TGTGGTTCATTTCTGGTTCTCCTAAGGAAATTCTGGTAAAACAATTAGTG
TTGATTTTAGGGTGGGATGTGCACATGAAAAAATTGATGCACAAAACCAG
TTTGAGGTCCTCCTTGACTTTGTCAGCCCTTACACTGTACCTGTGCAAAC
CATTTGTCTGGTTCTCACAAGCACATAGGTTTCTGTTCTGCATGAATGGT
AACAGGTATTTCCCTTTCTTCTATTCAGGATATTCTATCCCTCATAAAGG
AAAAAGACCCCAAAACTGTGGGCATATTCCTGATATCTCCAAATGCGAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTGATCCACTTAGATTTGACCTTAG
TACAAGGAGTTAGGAATAGATCAATTCGTTTTCTTCTACATGTTAATGGC
CAGTTGTGCCAGCACCATTTTTAATGATAAGGATATTTTAATTTAGGAGT
GAACACAAATTAGTAACCTCATTTTGGTTTTGTATGCTTATTTTACATAT
GTGAATTTAAGTTGTTATATGGAACTTAAGAATCTTTGATAAAATAATAC
CCATATTTTGTCATTAAAATGAATGATGATTATTATGCATTCATTGTGGC
TTTTTATATGATTTGTAAATTAATTCAATAAAAATTCAATATTTAAATTT
ACTCTTCCAGGAAACATCATTTTATCTAACTTTACAGTAAAAAAAAAAAT
GAATGCTTAAGGGAGTCTTCTACCTTTTGAGTTGAGTTAATTTACATTAT
ATTTTCTAAGATGAGAACCACTTTCATTAAGTGAAACTGATTTTAAAGCA
TTGCATAATAAAATAAAAATGAAGAACTCTGGGGTAGTGTTTGATTTGAT
AGGTTTATATCTTGAAACACTCCTTCTATGTTTAACCTTCCTCATGTGTA
CTGTTAGAGAACACAGTTCAGTATTTGACACAAATGTAATTATTTAAATT
TTCTGTATATCAAAAGCTTTCACTCCCTCTAAAGATACCGGAGGGATATG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_n03.g1 MSMg01no317_n03.g1 CHROMAT_FILE:
MSMg01no317_n03.g1 PHD_FILE: MSMg01no317_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:52 2005
         (646 letters)



>mm_chr3_48766469_48767514
          Length = 1046

 Score = 1249 bits (646), Expect = 0.0
 Identities = 646/646 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgatccacttagatttgaccttagtacaaggagttaggaatagatcaattcgttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgatccacttagatttgaccttagtacaaggagttaggaatagatcaattcgttttct 260

                                                                       
Query: 61  tctacatgttaatggccagttgtgccagcaccatttttaatgataaggatattttaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacatgttaatggccagttgtgccagcaccatttttaatgataaggatattttaattt 320

                                                                       
Query: 121 aggagtgaacacaaattagtaacctcattttggttttgtatgcttattttacatatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtgaacacaaattagtaacctcattttggttttgtatgcttattttacatatgtga 380

                                                                       
Query: 181 atttaagttgttatatggaacttaagaatctttgataaaataatacccatattttgtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttaagttgttatatggaacttaagaatctttgataaaataatacccatattttgtcat 440

                                                                       
Query: 241 taaaatgaatgatgattattatgcattcattgtggctttttatatgatttgtaaattaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaatgaatgatgattattatgcattcattgtggctttttatatgatttgtaaattaat 500

                                                                       
Query: 301 tcaataaaaattcaatatttaaatttactcttccaggaaacatcattttatctaacttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaataaaaattcaatatttaaatttactcttccaggaaacatcattttatctaacttta 560

                                                                       
Query: 361 cagtaaaaaaaaaaatgaatgcttaagggagtcttctaccttttgagttgagttaattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaaaaaaaaaaatgaatgcttaagggagtcttctaccttttgagttgagttaattta 620

                                                                       
Query: 421 cattatattttctaagatgagaaccactttcattaagtgaaactgattttaaagcattgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattatattttctaagatgagaaccactttcattaagtgaaactgattttaaagcattgc 680

                                                                       
Query: 481 ataataaaataaaaatgaagaactctggggtagtgtttgatttgataggtttatatcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataataaaataaaaatgaagaactctggggtagtgtttgatttgataggtttatatcttg 740

                                                                       
Query: 541 aaacactccttctatgtttaaccttcctcatgtgtactgttagagaacacagttcagtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacactccttctatgtttaaccttcctcatgtgtactgttagagaacacagttcagtat 800

                                                         
Query: 601 ttgacacaaatgtaattatttaaattttctgtatatcaaaagcttt 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgacacaaatgtaattatttaaattttctgtatatcaaaagcttt 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)