Query= MSMg01no317_o07.b1 MSMg01no317_o07.b1 CHROMAT_FILE:
MSMg01no317_o07.b1 PHD_FILE: MSMg01no317_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:57 2005
(663 letters)
>mm_chr3_77851422_77852484
Length = 1063
Score = 1205 bits (623), Expect = 0.0
Identities = 650/659 (98%), Gaps = 2/659 (0%)
Strand = Plus / Plus
Query: 6 gaattc-caagcctatgtctttgtaattccctgacaaatctactaggataatagttccat 64
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacaagcctatgtgtttgtaattccctgacaaatctactaggataatagttccat 265
Query: 65 atgacatatcaccaaaccatgttgtaaaattgacatacaaattcatcatgatcatagaga 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgacatatcaccaaagcatgttgtaaaattgacatacaaattcatcatgatcatagaga 325
Query: 125 gtatacatttggtataaaggtcaatgtaatcaaatgtcatcaaaaagaataagtgagata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtatacatttggtataaaggtcaatgtaatcaaatgtcatcaaaaagaataagtgagata 385
Query: 185 attacctgtttaaaaaacagttatgaagaaagtagaaataatctatttggggacattttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attacctgtttaaaaaacagttatgaagaaagtagaaataatctatttggggacattttt 445
Query: 245 ctactaggtactttagaaaatacactttctatcataaagtaccttatctttgctgaaact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctactaggtactttagaaaatacactttctatcataaagtaccttatctttgctgaaact 505
Query: 305 gaaaactttgcatgtaatattatgcattttccatattagttcatggactgacaattttta 364
|||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaaacctttgcatgtaaga-gatgcattttccatattagttcatggactgacaattttta 564
Query: 365 gtcagccatgctacttaatactgctatatgaaaaattaataaatcatatttatgaacctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcagccatgctacttaatactgctatatgaaaaattaataaatcatatttatgaacctc 624
Query: 425 catagccagaagagataatactcacaccctgctgacaatgtcatagaagttattcataca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catagccagaagagataatactcacaccctgctgacaatgtcatagaagttattcataca 684
Query: 485 ttagatttctgatatgttaggaaaaaggagtttttatttttcttgtcaatcatccattgt 544
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttagctttctgatgtgttaggaaaaaggagtttttatttttcttgtcaatcatccattgt 744
Query: 545 tctagtagtagaggcattccagaacccagctgtgggatttctgtagcagaatatggctta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctagtagtagaggcattccagaacccagctgtgggatttctgtagcagaatatggctta 804
Query: 605 ttccatggtctagtaacaaagcaaacctaatcattgaatggcatcctgtgtaaatgtaa 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttccatggtctagtaacaaagcaaacctaatcattgaatggcatcctgtgtaaatgtaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no317_o07.g1 MSMg01no317_o07.g1 CHROMAT_FILE:
MSMg01no317_o07.g1 PHD_FILE: MSMg01no317_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:57 2005
(574 letters)
>mm_chr3_78011082_78012054
Length = 973
Score = 1058 bits (547), Expect = 0.0
Identities = 568/575 (98%), Gaps = 3/575 (0%)
Strand = Plus / Minus
Query: 1 aaaccctttctttcttttgcatattctaataaggtcatcagactgcattcatgcattcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaaccctttctttcttttgcatattctaataaggtcatcagactgcattcatgcattcac 714
Query: 61 ttttaatacagaagctctttgagaaatagccaatttctgtaaaataactgatgattaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ttttaatacagaagctctttgagaaatagccaatttctgtaaaataactgatgattaaaa 654
Query: 121 gtaaaacctcccccaaatcttatttttctatactcaaaaatgcccttgttgcttccttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtaaaacctcccccaaatcttatttttctatactcaaaaatgcccttgttgcttccttag 594
Query: 181 ctggattgaaatacatcttctagtaattttgtttccaccttcattgctcataagtgattt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ttggattgaaatacatcttctagtaattttgtttccaccttcattgctcataagtgattt 534
Query: 241 tacacgtagtggagatcttttttttttctttctccctgacaattcattatattgaatggc 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tacacgtagtggagatc-tttttttttctttctccctgacaattcattatattgaatggc 475
Query: 301 acatgaaatacctcatctgtctttttacaggcacatcaaaacccgcctactttgattgaa 360
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 474 acatgaaatacctcatctgtctttttacaggcacatcaatacttgcctactttgattgaa 415
Query: 361 ctgtccccatcagcaattcattaacctgtaacacgatagcctgttgtttcattacttccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ctgtccccatcagcaattcattaacctgtaacacgatagcctgttgtttcattacttccc 355
Query: 421 ctaatgctgctgttacttggagaaaacttgaggaggattctacattgctatttaggtgtt 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 c-aatgctgctgttacttggagaaaacttgaggaggattctacattgctatttaggtgtt 296
Query: 481 t-gctttatatatatataaagctgttgtgctcttacaggtagagatgtcatcggagggca 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tggctttatatatatataaagctgttgtgctcttacaggtagagatgtcatcggagggca 236
Query: 540 tttacacttctcaggtgtggcactcgtgtacgggt 574
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tttacacttctcaggtgtggcactcgtgtacgggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
