Query= MSMg01no317_p18.b1 MSMg01no317_p18.b1 CHROMAT_FILE:
MSMg01no317_p18.b1 PHD_FILE: MSMg01no317_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:04 2005
(181 letters)
>mm_chr3_25422382_25422963
Length = 582
Score = 286 bits (148), Expect = 4e-82
Identities = 160/164 (97%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 5 gaattcttggtttt-caaatatttaacaattaatattttccctacataaaaacaacaatg 63
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 343 gaattcttggttttataaatatttaacaattaatattttccctatataaaaacaacaatg 284
Query: 64 cttaagctgtgccaaaaccaagagtgaaataaactctgtgagacagatgagcatttgtgc 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttaagctgtggcaaaaccaagagtgaaataaactctgtgagacagatgagcatttgtgc 224
Query: 124 ttagggatgaggaagttactgtgtgtgtgtgtgtgtgtgtgtgt 167
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttagggatgaggaagttactgtgtgtgtgtgtgtgtgtgtgtgt 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 582
Length adjustment: 8
Effective length of query: 173
Effective length of database: 574
Effective search space: 99302
Effective search space used: 99302
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no317_p18.g1 MSMg01no317_p18.g1 CHROMAT_FILE:
MSMg01no317_p18.g1 PHD_FILE: MSMg01no317_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:04 2005
(663 letters)
>mm_chr3_25272316_25273378
Length = 1063
Score = 1216 bits (629), Expect = 0.0
Identities = 656/667 (98%), Gaps = 4/667 (0%)
Strand = Plus / Plus
Query: 1 ctttcttcacagtctctgatcatttaccatagatcactgagatgactaaatctctttaag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctttctttacagtctctgatcatttaccatagatcactgagatgactaaatctctttaag 256
Query: 61 tagcatatttgccccacaattatctgtcttcatgtcaacttcattcttaatcatagtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tagcatatttgccccacaattatctgtcttcatgtcaacttcattcttaatcatagtcta 316
Query: 121 atgcaacaaaaatcttatgcttgaataaagtctctgtgacagatactcttgatattttca 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 317 atgcaacaaaaatcttatgcttgaataaagtctctgtgagagatactcttgatattttca 376
Query: 181 tttcctgttccatcacaatgccaagagtagaaaaaggcatacagtatatatccagcaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttcctgttccatcacaatgccaagagtagaaaaaggcatacagtatatatccagcaatt 436
Query: 241 cttttgagtgaataaacaggaaatttatttttggataaattttctattgaaataaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttttgagtgaataaacaggaaatttatttttggataaattttctattgaaataaatttt 496
Query: 301 tataccatttataagcaatgtttaattttatgtcaatcaatccacccatcacttgtcagt 360
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 497 tataccatttataagcaatgtttaattttatgtcaatcaatccatctatcacttgtcagt 556
Query: 361 ctagctacttatcatatacatatatatgtgatgtatatttatataatatatacacacata 420
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 557 ctagctacttatcatatacatatatatgtgatgtatatatatataatgtatacacacata 616
Query: 421 tacatatatacatgtatatgtacatcatatacacatatatacatatatgtatgtacatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tacatatatacatgtatatgtacatcatatacacatatatacatatatgtatgtacatat 676
Query: 481 gtacatcatacacacacaca----tatacacacacactccaaacacatacacacatccaa 536
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaacatcatacacacacacacacatatacacacacactccaaacacatacacacatccaa 736
Query: 537 cctttgtaagctaggtagagatagatttatagaactaaaaaatacacaacctctgttatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctttgtaagctaggtagagatagatttatagaactaaaaaatacacaacctctgttatt 796
Query: 597 gtcaattgaagtgttactccattttactctaaaatgccaatttggaacacatacactgag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gtcaattgaagtgttactccattttactctaaaatgccaatttggaacacatacactgag 856
Query: 657 gtcttca 663
|||||||
Sbjct: 857 gtcttca 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
