Query= MSMg01no318_k23.b1 MSMg01no318_k23.b1 CHROMAT_FILE:
MSMg01no318_k23.b1 PHD_FILE: MSMg01no318_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:54 2005
(675 letters)
>mm_chr3_63496096_63497171
Length = 1076
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 5 gaattctaccttctttt-ctaattccataggctagggaccaagcttctaatacacaagct 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaccttcttttaataattccataggctagggaccaagcttctaatacacaagct 264
Query: 64 tgtaagaagcatcctggatgtttatggtagaactcatatatatcaaggataagggactgt 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtaagaagcatcccggatgtttatggtagaactcatatatatcaaggataagggactgt 324
Query: 124 gtcaagccgtcagaaaactaacttaggaagggtaaagtattccatgcaagtgtgagaaac 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 gtcaagccgtcagaaaactaacttagggagggtaaagtattccatgcaagtgtgagaaac 384
Query: 184 caaatatgtgacaagagaaagacatcatctatggctgtggactggctgcagcagctagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 caaatatgtgacaagagaaagacatcatctatggctgtggactggctgcagcagcgagaa 444
Query: 244 tgacagcagcttaatttgctaatctaaaaggatgagactgagactgaccaccatacagtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacagcagcttaatttgctaatctaaaaggatgagactgagactgaccaccatacagtg 504
Query: 304 tagaagtactggccatctacctcttttcttgaggtagtgaaggtctcttgttcttatata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagaagtactggccatctacctcttttcttgaggtagtgaaggtctcttgttcttatata 564
Query: 364 agatctaggtcaagaaaatcctggtgaaaaggttactgtaaaccagacccaggtgtgatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatctaggtcaagaaaatcctggtgaaaaggttactgtaaaccagacccaggtgtgatc 624
Query: 424 actctagctcttttttaccccatccctctcaatatcaagtgtttgcatggcttttggcta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actctagctcttttttaccccatccctctcaatatcaagtgtttgcatggcttttggcta 684
Query: 484 gtcagctgttcccacagctgttgaggacagactattgcagctgagactgtcattgtcatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtcagctgttcccacagctgttgaggacagactattgcagctgagactgtcattgtcatc 744
Query: 544 actgagctgtccccattagcaacaccagctgaggtccagtccggtacaccaaaggggctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgagctgtccccattagcaacaccagctgaggtccagtccggtacaccaaaggggctc 804
Query: 604 cagctctgctggagatgcctggaggagctgcaaagcaccagttagaatcatgcaagttaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cagctctgctggagatgcctggaggagctgcaaagcaccagttagaatcatgcaagttaa 864
Query: 664 tgcctcatggga 675
||||||||||||
Sbjct: 865 tgcctcatggga 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no318_k23.g1 MSMg01no318_k23.g1 CHROMAT_FILE:
MSMg01no318_k23.g1 PHD_FILE: MSMg01no318_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:54 2005
(647 letters)
>mm_chr3_63534264_63535310
Length = 1047
Score = 1230 bits (636), Expect = 0.0
Identities = 636/636 (100%)
Strand = Plus / Minus
Query: 12 tatcgtgtgaccatagcaacttttataaagggagagatttaactggggctggcttatagt 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 tatcgtgtgaccatagcaacttttataaagggagagatttaactggggctggcttatagt 988
Query: 72 tcagaggtttagtccattatcatcatggcaagaagcaaggtgccatgcaggcggacatag 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tcagaggtttagtccattatcatcatggcaagaagcaaggtgccatgcaggcggacatag 928
Query: 132 tgctggagaggtagcttagagtcagtaggaagcaggaagagagggacaataggcctggat 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tgctggagaggtagcttagagtcagtaggaagcaggaagagagggacaataggcctggat 868
Query: 192 taaatgtttgaaacctcaaatggcgtttgaagttagccacctgcccagggatctggacct 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 taaatgtttgaaacctcaaatggcgtttgaagttagccacctgcccagggatctggacct 808
Query: 252 ttccttacataaagggtctgcatgtacattttgccatgtagtctaggggagtttaattga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ttccttacataaagggtctgcatgtacattttgccatgtagtctaggggagtttaattga 748
Query: 312 cctgtagaattctaagatttgaagaaattctgtccctttcaccatcaatagtcacatgat 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cctgtagaattctaagatttgaagaaattctgtccctttcaccatcaatagtcacatgat 688
Query: 372 ttcccatgtcacgggaaaagaccaaaacaatgcaggctttagagtatagtttcatttcta 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttcccatgtcacgggaaaagaccaaaacaatgcaggctttagagtatagtttcatttcta 628
Query: 432 cagaaaagtggtacttcgtggaaatcagaaccattattgtgtccccaggtatatactgta 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagaaaagtggtacttcgtggaaatcagaaccattattgtgtccccaggtatatactgta 568
Query: 492 taatttaatatacaccattacccttaatttaacaattatgttgttacaaccagacacagt 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taatttaatatacaccattacccttaatttaacaattatgttgttacaaccagacacagt 508
Query: 552 cttctaaactacagtaactgatgcttcacctcagaggtaacaatgggaactgacattagt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cttctaaactacagtaactgatgcttcacctcagaggtaacaatgggaactgacattagt 448
Query: 612 ttcaaagaagacaaaagcttaatgacagctgaagtc 647
||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcaaagaagacaaaagcttaatgacagctgaagtc 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
