BAC Information

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BAC

Clone NameMSMg01-318M22
Chromosome3 (Build37)
Map Location 54,588,386 - 54,588,679
singlet/doubletsinglet
Overlap geneSmad9
Upstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5
Downstream geneRfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318M22.T7 (MSMg01no318_m22.b1)MSMg01-318M22.TJ (MSMg01no318_m22.g1)
ACCAG438503AG438504
length749746
length of high quality
(start - end)
---293 (64 - 356)
definitionCHROMAT_FILE: MSMg01no318_m22.b1 PHD_FILE: MSMg01no318_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:03 2005CHROMAT_FILE: MSMg01no318_m22.g1 PHD_FILE: MSMg01no318_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTCAACGANTCACTATAGTGCGNGACCCGNCNGAANNNNNNNANN
ANGTGACGNCCAGCNGAAGGAGNNNAAGNGGNAGAANANNGAAGGGAGAA
NANGGGNGATTTGGCCCCAAGGACGAGAAACCNANNCGCNNNAGCNAGAA
GAGCNNGGAAGGGAGGGGAGAGNNGANCCGNCCCAAACACCGNGCCGNGC
CACANAAACCCGGGCCGGAGGAGGGACACGAGCCCCNAAACACATTTTTC
TGGGAGNTCAAAGACATGGNTGGCTACACAGAGCTGGCAGCCAACCCGCC
NAGGCAAGACCTTAGGTGATTTTCGCANGCACAAGAGCNAAAGCAAGGGC
GGATTTTTTTTTCTCCCCCCCCCACCCGCCTAAGTAGATGCTTGTCATCT
CTTAGAACACCCCCCACACGGCGAAAAGAACACAGACGGTGGGGGCGGGG
GGGAACTTCAGTACAGTTCCAAGCCAGACTCCTTCTCGCAAACTAGCGAA
CGACCAACAGAAGCGTCGATTCTGCCTCTGGCTTGGCAGACACAGAACAC
CTAACACGGTCGCCCAGGATAGCCCACCCAGGGCAACAAAGGCCATCGTA
GACCAGAGAACCCCAGATGTGAAGGCCCCCGGGACCTAGGAAAAGGGGGC
TTTTTTTTTTTTTTTTAGAGCCCGCCCGAGCGGTTCGCGCAACGTTAATT
CTGGCAAGCCCGAAGAGTTAACGCGAGACGTGTAACCTCGTTTTCTGTT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAAACTGAAATGAAAAATGAAAACTCAAAAAACTATA
AAATTTGGCTTTTGGCCGAGTACCTAAAAAAGAAGACGAAGTGCATCTTT
ACACACATCCTATTAGTGATCACATTTAGAACTGTTACTCAGAAAATATT
CGTGAAAGATTTATTTTCTGAGTATATATGGGGGCAGATACCTGCTGATG
ATCACAAAGGGGGCTGGAACCCCCAGATCTGGAGTGACAGGCAACACTGG
TGCTGGGAACCAAATTGGCGTCCTCTGCAAGAGCAATGTGTGTGATCTTA
CCAGCTGATTTTTGTCTCCCGCCCCCCAATGTCTTAATGAACATTTTCCC
ATTTAGATATCGCCCCGCACAAACTCAAATATTACTAATGGGGTTTTGTT
TTTGTTCAGAATCATGTTGTGTGATGGTGGCTGTCCTCAAATGGTGGAGG
TCAAACTGTGGGCACTTTCAGATTCCTGGTATGTAAAGAGAGTTTGGAGA
GAATGAAGGAAGGCAGGTTGACATTGGAGCAAACTCGTCGGGTTTGCTGA
AAGAGTGTAACCTTCCAATCACCTTCCCAGACAGGATCCCCATCCCAGAG
AGCAAGCCCTACACGGAGATGTGGTGTTCTTGACGCCAAGATGGCAAGTG
TGGAGAACTTGAAGGGTGTGGTCTGCCGCCCACCCTGTGATGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_m22.g1 MSMg01no318_m22.g1 CHROMAT_FILE:
MSMg01no318_m22.g1 PHD_FILE: MSMg01no318_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:03 2005
         (293 letters)



>mm_chr3_54588306_54588999
          Length = 694

 Score =  530 bits (274), Expect = e-155
 Identities = 289/294 (98%), Gaps = 1/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaactgaaatgaaaaatgaaaactcaaaaaactataaaatttggcttttggccgagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 374 taaactgaaatgaaaaatgaaaactcaaaaaactataaaatttggcttttggatgagtac 315

                                                                       
Query: 61  ctaaaaaagaagacgaagtgcatctttacacacatcctattagtgatcaca-tttagaac 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 314 ctaaaaaagaagacgaagtgcatctttatacacatcctattagtgatcacattttagaac 255

                                                                       
Query: 120 tgttactcagaaaatattcgtgaaagatttattttctgagtatatatgggggcagatacc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 254 tgttactcagaaaatattcgtgaaagatttattttctgagtatatatgggggcaaatacc 195

                                                                       
Query: 180 tgctgatgatcacaaagggggctggaacccccagatctggagtgacaggcaacactggtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tgctgatgatcacaaagggggctggaacccccagatctggagtgacaggcaacactggtg 135

                                                                 
Query: 240 ctgggaaccaaattggcgtcctctgcaagagcaatgtgtgtgatcttaccagct 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ctgggaaccaaattggcgtcctctgcaagagcaatgtgtgtgatcttaccagct 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)