BAC Information

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BAC

Clone NameMSMg01-319A08
Chromosome3 (Build37)
Map Location 98,068,854 - 98,069,140
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4
Downstream geneHmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319A08.T7 (MSMg01no319_a08.b1)MSMg01-319A08.TJ (MSMg01no319_a08.g1)
ACCAG438659AG438660
length732733
length of high quality
(start - end)
239 (124 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no319_a08.b1 PHD_FILE: MSMg01no319_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:18 2005CHROMAT_FILE: MSMg01no319_a08.g1 PHD_FILE: MSMg01no319_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGTCAGTTGCGCAACTTAGTAAGAGCTTGTTTCAGAATGAAAAGTGAA
AAGGCAAACAACATTTGCCCCCAACAAGAACGGGGCAGAGAGGCCAAGCG
CAGTAGTAGAGTGCTTACCCAGCATGCATGAGGCCCTGGGTTCCAACCTA
AGTACCAAAAACTAAACCAAAACTACAAGAACAACAGAACCCAAAAAGTA
AAACAAACCAAAAACAAACTAAGTCTTCCAGAAAACAAACAAAAAGCCCA
GCCTACCCCAGATCTACTGTCTTCCTACATTTCCTCACCATCCATAATGG
AGTTGTGCAGTGCTTTTTTAACGACCATGCCTGCAGAGATGGTGCTGGAT
AAGCCAGTGAGCTACACCCACCCCCATGCACTCCTCCCAGGGNTGGGACC
CTCTTTCTCATCCTTTGGCAGTAGTTATCACAGGAGAAGTTCTCAGGACA
CATTGGCAAATGAATAGACTACTTCTGCTGTCCAGCCTAGACCCGTGGTC
CACACTGCAGCATGCTGTCATATCCAGCCTAGAACCCGAGGTCCACACTG
CTGCACGCTGGCATCTATTATACACTAACTAATTTACTGTACATAGTAAG
AAACATTGCCTAAATTCTTCATGTTGATCAGTGTTTATCCCCCCAAGGTG
CAGAGCTGACTCTAGCCATTTCTGATACCCAG
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCTGTAAGTAGAGTCAGCTG
AAGGGCAAAGCACCTTGAGCTGCCCTTTGGAATGGGACCAAGAGTTGAAG
TAATGTCTAGTTTAAGGGTGGGTGTCTGCTTGCAGTCCCATAGATGGGTT
TAGCCTAGAAAAACGAACTGAGACCCAACAGGTTGGTGGAAGTGGAGGTG
ATAAAGAGGCCCAGGTAGAGTCCCTACCACAGAGCTTGAAGGAGTTTAGG
GTTTAGGATTTTGAAATAAACTGAGTCCTGGGTGGATAGGCCAGGATAAA
CATAAACGAAATCTTGGTGAAACCAGGAACTCTAAACGATGTGACACCGG
TATCTCATTTAACTCTCCCCCCCCTCACCAGACAGTGCCTGGTTTTCCTT
TCACTATCTTTTAGCGTCCAGATTCTTGGTTTTCCGAGCTGCTGTGGGAT
AGGAGGAGCCTGGGAAGGAAGAGACTAAACCCCAGGAGCATATGGAGTCC
AGAAAAAAATCAAGGAGTTAGCATAATCTAGACAATAGGGCAACACTCTT
GCGTGACACCATATTCCACCAGTACACAAGCCAGAGGTACTTTCACAACC
ACGTTATAGGGCACACCCTTAGGACCACTCGTAACTCTGTTAGTAGGACT
TAATGCCAAGTCTGGCGAGTTAAGGGTACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_a08.g1 MSMg01no319_a08.g1 CHROMAT_FILE:
MSMg01no319_a08.g1 PHD_FILE: MSMg01no319_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:18 2005
         (287 letters)



>mm_chr3_98068654_98069340
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccctgtaagtagagtcagctgaagggcaaagcaccttgagctgccctttggaatggg 60
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 487 tctccctgtaagtagagtcagctgaagggcaaagcaccaagagctgccctttggaatggg 428

                                                                       
Query: 61  accaagagttgaagtaatgtctagtttaagggtgggtgtctgcttgcagtcccatagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 accaagagttgaagtaatgtctagtttaagggtgggtgtctgcttgcagtcccatagatg 368

                                                                       
Query: 121 ggtttagcctagaaaaacgaactgagacccaacaggttggtggaagtggaggtgataaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggtttagcctagaaaaacgaactgagacccaacaggttggtggaagtggaggtgataaag 308

                                                                       
Query: 181 aggcccaggtagagtccctaccacagagcttgaaggagtttagggtttaggattttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aggcccaggtagagtccctaccacagagcttgaaggagtttagggtttaggattttgaaa 248

                                                          
Query: 241 taaactgagtcctgggtggataggccaggataaacataaacgaaatc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taaactgagtcctgggtggataggccaggataaacataaacgaaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)