BAC Information

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BAC

Clone NameMSMg01-319E06
Chromosome3 (Build37)
Map Location 105,421,379 - 105,421,665
singlet/doubletsinglet
Overlap geneKcnd3
Upstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneDdx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319E06.T7 (MSMg01no319_e06.b1)MSMg01-319E06.TJ (MSMg01no319_e06.g1)
ACCAG438837AG438838
length834726
length of high quality
(start - end)
146 (68 - 213)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no319_e06.b1 PHD_FILE: MSMg01no319_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:35 2005CHROMAT_FILE: MSMg01no319_e06.g1 PHD_FILE: MSMg01no319_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAGTTTTAACTTTAGATTTCTGGAAATATTGTAAAACTGTTCGCTGTAA
GGTGAAATTCTTTTTCACGCGTTAAATTTATTTTATTTTATTTTATTTTA
TATGTATGGGTGTTTTATCTTTGTGTATATCTGTGTCAGAGAGAATTAGA
TCCTTTAGAACTGGAGTATGCATAGTTTTAAGCTGCCATGTGAGTGCTGT
TACTTGAATTCTCATCCTATCTTAATTGCTGAGATCTCTCTCAACACAGA
CCACTCCATTTTTTATTTTTTTTGCAAATGGCCCTAGACTTGAAAAGCAA
AAGTTTTTTTTTTTTTTCTCCCCCCCCCCCCCTTATCCTGTTATGTTTAT
TTTATTGTTGATAGACCCCCCCCCCTCCCCAAAAAAAAAATAATAAATTT
TTGTTGGGCGGGTATGCATTTTATCTCCTCGTTTTATATTTGTTTGCTTA
CTTTATTCCCTCGATTTTCCACTTTGTTTATCGCCTATTAACCCTTACCT
AATGCATTTCATCTCACTTTTCATATCTTCTGTTATTGAACATCACTCTC
TCCTTTTATGTTGTATAATTTTCATATTTATATGTTAGTATATCACATCC
CCATATATTTTATAGTGTATCCGGATCTCTATTCTTTTTAATATCCCCTG
CATATTTCTTTCTTCTTTACTCCCCCATCATTCTCCTTAATCCAGTCCTT
CTTATACATCCTTTTTTTATTTCTCTGATATTATGAGCGTTATTCCCATT
TTTCCTGTCCCAGATATCCTCTCGTATACCTTCN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGTACTTAACTAACAAGGAAGGTGGGTAT
TAGAATCCTGTTTGTAACCTCGTGAGGCTAGCCTGAGCTACGTGAGGCCC
TGCCTCAAAATAAACTAATCAACTTAATTTAATAAAAATTCAACCTGTGT
GGTTTCCTGGTGTTGTGGGACCCCTAATAATAGCTGTGATTCCTAGACTA
GATGAGCTCTTCAGAGAGAACCCCACAAAAGTCAAGGGGCTACGTGCTGA
GTCCCGGGATGTGGATACTGGTTGGGCTCCTCCCTCAGGCCAGCCCCTTC
TGCCTTCCTTTTTTCTTGCCTCCTCCCACCCCAAGCCCCAGCTTTCACCC
ACTCCGAGAAATTCCCCCCCCCACGCAAAAAAAAACAATGATCAGTTTAA
CTAAAGCATCCTAAACATTAGCTGCTGTCAGTATGTCTATTATTACTATT
CTAGAAAGTTCACGTCTCTCTTAAGTAAGGATTTTGTTCTGATGTGCCAC
GTCCTGTGACAACTCTGAGTGAACTCTTCAGCCTTGGACACTTTTCATAC
ACTATGAATTCATCTGCATAATAACGCACCCAAAGTGACCTTCCGACTCA
CCTATTAGCCTCACAAAGGAATGAATTCCCTAAACCTAAACTAAAGGCCT
GCTGTCAGTGTCTCTGTGTGTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_e06.g1 MSMg01no319_e06.g1 CHROMAT_FILE:
MSMg01no319_e06.g1 PHD_FILE: MSMg01no319_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:35 2005
         (291 letters)



>mm_chr3_105421179_105421868
          Length = 690

 Score =  480 bits (248), Expect = e-140
 Identities = 278/288 (96%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtacttaactaacaaggaaggtgggtattagaatcctgtttgtaacctcgtgaggcta 60
           |||||||||||||||||| ||||||||||||||||||||||||| || ||  ||||||||
Sbjct: 201 cagtacttaactaacaagaaaggtgggtattagaatcctgtttggaagct-atgaggcta 259

                                                                       
Query: 61  gcctgagctacgtgaggccctgcctcaaaataaactaatcaacttaatttaataaaaatt 120
           ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcctgagctacatgaggctctgcctcaaaataaactaatcaacttaatttaataaaaatt 319

                                                                       
Query: 121 caacctgtgtggtttcctggtgttgtgggacccctaataatagctgtgattcctagacta 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caacctgcgtggtttcctggtgttgtgggacccctaataatagctgtgattcctagacta 379

                                                                       
Query: 181 gatgagctcttcagagagaaccccacaaaagtcaaggggctacgtgctgagtcccgggat 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 gatgagctcttcagagagaaccccacaaaagtcaaggggctacgcgctgagtcccgggat 439

                                                           
Query: 241 gtggatactggttgggctcctccctcaggccagccccttctgccttcc 288
           |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtggatgctggttgggctcctccctcaggccagccccttctgccttcc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)