BAC Information

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BAC

Clone NameMSMg01-319E19
Chromosome3 (Build37)
Map Location 3,610,888 - 3,611,172
singlet/doubletsinglet
Overlap geneHnf4g
Upstream geneLOC667655, LOC100039140
Downstream geneEG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319E19.T7 (MSMg01no319_e19.b1)MSMg01-319E19.TJ (MSMg01no319_e19.g1)
ACCAG438862AG438863
length741746
length of high quality
(start - end)
289 (116 - 404)229 (421 - 649)
definitionCHROMAT_FILE: MSMg01no319_e19.b1 PHD_FILE: MSMg01no319_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:37 2005CHROMAT_FILE: MSMg01no319_e19.g1 PHD_FILE: MSMg01no319_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAACGACTCCTATATTCAGAGAACCGCGGATTCTCTCTATT
TACATAGAAAACTTTTTAGGAAAGGACACTTTTTAATCTGTACAGGTTTA
TTTATCTACCCTACACTGGAATTTGAAAAGAGTTTGTGAACTTAGTAAGA
CTTTAAAATGGATTAAATATAGATTTTGAAAAGCTTCTGAGAGCTGGAAT
CAGAACTTTTATCTCTATTGGTCAAGACGCCATGTACCTATGTTAGAACC
TTTTCAATGTGTCAGTATTCCTAAATACTATGCCCACTGATGTTCTTTGA
GTACTCTTTGTGATAGCTGGTCAAGTGCTCAGGCCCTTTCTAAGTCCAGT
TTGGCTCCTTTTGCTTTATCATTCTGCTGTGTAGTTTTTCTGTTGGGTGT
CCCACCCCCCCACGTAAGCAGTTAAAAATGAGGGCTTTCCTGTTGAAATC
AGTCCAAAGCTCCCTAAAGGATACTTTTAAGGAGGTAGGATAAGTTCCTT
GGCTACTTTGGCTTCTTTATACTTTTGTTTTGTTTTGTTTTCTGTAAGTT
GTGGCATCTATTGGGATAGGTCAAGGATTTCCTGATCATGTGACATTCCT
TGAAAACACTGGGGGCATTTTCATCTTTAATGATGCTCCTTTTACAGACT
CTTCACTGGATAGAGTCAAGTGCCTGAGGCCTTTGAAAGGTCTTTGATCA
TGTGGAAAGGTGCCTTACCAGAGTACTAAGGCCCTTGTAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCGAAAATACTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAAATGTTCAACCCCCTTAATCATCAGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCTGTCAGAATGGCTAAGATGAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATATCAGGCTGTACAACCACTCTGGAAATCAGTCTG
GTGGTTCCTCAGAAAATTGTTTATAGTATTACTGGAGGATCCCGCAATAC
CTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACA
TGCTCCACTATGTCCCCCCCACCCTTATTTATAATAGCCAGAAGCTGTAA
AGAACCCATATGCCCCTCATCAGAGGAATGGATACAAAAAAATGTACATT
TACACTCAGCTATTAAAGTACTACTCATCTATTAAAAGAAATGAATTTAT
GAAATTCCTAGGCAAATGGTGGACCTGGAGGTCATCATTCTGAGTGAGGT
AACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGGT
ATTAGCCCATAAACTTAGTATACCCGAGATATAATATACAATTTGCAAAA
CACATGATACTGGAAAAGAACGAAGACTAAAGTGTGAACTCTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_e19.b1 MSMg01no319_e19.b1 CHROMAT_FILE:
MSMg01no319_e19.b1 PHD_FILE: MSMg01no319_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:37 2005
         (289 letters)



>mm_chr3_3610688_3611376
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaatttgaaaagagtttgtgaacttagtaagactttaaaatggattaaatatagatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaatttgaaaagagtttgtgaacttagtaagactttaaaatggattaaatatagatt 260

                                                                       
Query: 61  ttgaaaagcttctgagagctggaatcagaacttttatctctattggtcaagacgccatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaaagcttctgagagctggaatcagaacttttatctctattggtcaagacgccatgt 320

                                                                       
Query: 121 acctatgttagaaccttttcaatgtgtcagtattcctaaatactatgcccactgatgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctatgttagaaccttttcaatgtgtcagtattcctaaatactatgcccactgatgttc 380

                                                                       
Query: 181 tttgagtactctttgtgatagctggtcaagtgctcaggccctttctaagtccagtttggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgagtactctttgtgatagctggtcaagtgctcaggccctttctaagtccagtttggc 440

                                                        
Query: 241 tccttttgctttatcattctgctgtgtagtttttctgttgggtgt 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttttgctttatcattctgctgtgtagtttttctgttgggtgt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)