BAC Information

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BAC

Clone NameMSMg01-319G14
Chromosome3 (Build37)
Map Location 77,210,475 - 77,210,708
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G14.T7 (MSMg01no319_g14.b1)MSMg01-319G14.TJ (MSMg01no319_g14.g1)
ACCAG438942AG438943
length738724
length of high quality
(start - end)
291 (66 - 356)236 (125 - 360)
definitionCHROMAT_FILE: MSMg01no319_g14.b1 PHD_FILE: MSMg01no319_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:45 2005CHROMAT_FILE: MSMg01no319_g14.g1 PHD_FILE: MSMg01no319_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCCT
AGGATTAACATTAATTGATCGTCATGGATGATTGTTTTGATGTGTTCTTG
GATTTGGTTTGCTACACTTTTATTGAGTATTTTTGTATCGATATTCATAA
AGAAAATTGGTCTGAAGTTCTCTTTTTTTGTTGAGTCTTTGTGTGGTTTA
GTTATTAGAGTATTTGTGGCTTCATAGAACGAATTGGTTAGAGTATCTTC
AGTTTCTATTTTGTGGAATATTTTGAGGGGAATTGGAATTAGGTCTTCTT
TGAAGGTCTAATATTACTCTGCACTAAACATCTGGTCACAGGCTCTTTTT
GGTTGTGAGACTACTACAGAGCGCTTCTTTTTCTTTAGTGGATATTGACT
GTTTAGATCCCCCCCTCCGATCCAAATTTAACGTTTGTACGTAGTATTTG
TCTAGAAAATTGTCCATTTCATCTAGGTTTCCAGTTATTTTGAGTATAGG
CTTTTGTACTATGACCTGATGATGTTTTGGATTTCCTCAGGCCCTCTTGC
TATGTTTCCTTTTGATTTCTGATTTTGTTATTAGGATATTGATCCTGTGC
CCTCTATTTTGTCTGGCCAAGATTGTATCAATCATCTTGGATTTTTCTTG
CATATATTGTCCCTGATCCAGGATGCTCCCCTTTTATTGTCCATTTTTCG
CCTTTAATTGTTTACTTTTCTACCCTTGAACACCTTAT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTTATTTCTAATTATCTTAGTACAAAA
TAATAAATAATTGATTACCCCGGAAATATGAATCTTGCCAATATGCCGTA
TATATTAGAGAATGGATCCTTTTCACACACAGAAGGCAGTTACATGGCTA
AACACCGAGGAGAAGATGAGTCAATGAGCTAAAACAGGAAGCACTGATGT
GTTCCAAATTTGTTTAAAATTTCTAGGATTTTTATGCTTGTGCTTCAAAG
ACTACATTTGTATATTTAACAGAAGTCAAACCAAGTAAATGTCTAGAAGT
TGAGATTTGTTTTTTAATTACACACCCCTCTTAAAACAAGGTCTTAAAAT
AATTTAAGATAATACCCCCCCACCAACGAAGAAAGACCACATATATGATG
AAGATCTTAATAATTTGCAGAAGTATATTGTTGTGACAAAATATATCAAT
ATAGCCATACTTTTTATAGGAAACTATTTAAAGTTCCAAGTTCTTGCTTA
GGATGAAGAATACTATTTCCAGTATATCATCCTGAGTGAGGTAACCCATT
CACAAAAGAACATGGATGATATGCACTCACTGATAAGTGGATATTAGCGC
TGACGCTCAGAATACCCAAGATAAAATTCTATCCATTTTAGAAGGGGAGA
ACAAAACCGCCATGGAAGGAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g14.g1 MSMg01no319_g14.g1 CHROMAT_FILE:
MSMg01no319_g14.g1 PHD_FILE: MSMg01no319_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:45 2005
         (236 letters)



>mm_chr3_77210275_77210909
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatgaatcttgccaatatgccgtatatattagagaatggatccttttcacacacagaa 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgaatcttgccaatatgccgtatgtattagagaatggatccttttcacacacagaa 260

                                                                       
Query: 61  ggcagttacatggctaaacaccgaggagaagatgagtcaatgagctaaaacaggaagcac 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagttacatggctaaacaccaaggagaagatgagtcaatgagctaaaacaggaagcac 320

                                                                       
Query: 121 tgatgtgttccaaatttgtttaaaatttctaggatttttatgcttgtgcttcaaagacta 180
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 321 tgatgtgttccaaatttgtttaaaatttctaggatttc-atgcttgtgcttcaaagacta 379

                                                                  
Query: 181 catttgtatatttaacagaagtcaaaccaagtaaatgtctagaagttgagatttg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catttgtatatttaacagaagtcaaaccaagtaaatgtctagaagttgagatttg 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 635
Length adjustment: 9
Effective length of query: 227
Effective length of database: 626
Effective search space:   142102
Effective search space used:   142102
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)