BAC Information

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BAC

Clone NameMSMg01-320B23
Chromosome3 (Build37)
Map Location 29,047,795 - 29,048,079
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320B23.T7 (MSMg01no320_b23.b1)MSMg01-320B23.TJ (MSMg01no320_b23.g1)
ACCAG439445AG439446
length717733
length of high quality
(start - end)
229 (122 - 350)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no320_b23.b1 PHD_FILE: MSMg01no320_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:34 2005CHROMAT_FILE: MSMg01no320_b23.g1 PHD_FILE: MSMg01no320_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTGA
TCCTTCTAGACTTGAGCTGTGTACAAGGAGATAAGAATGGATCAACTCTC
ATTCTTCTACTTACCGCTGCCAGTTGAGCCAGCACCATTTGTTCAAAACG
TTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTTTCCTCACTGGATGG
TTTTAGCTCCCTTGTGAAAGATTAAGTAACTATAGCTGTGTGGGTTCATT
TCTGGGTCTTCAATTTTATTTCATTGATCTACCTGTCTGTCCTTGTACCA
GTACCATGCAGTTTTTATCACAGTTGCTCTGTAGTACACCTTGAGGTCAT
GTTTTTTAACTCCCCCCGACCTCTTTTATTGTTGAGAATAGTTTTTGCTA
TCCTAGGTTTTTTGTTATTCCAAATGAATTTGCAAATTGCCCTTTCTAAT
TTGGTGAAGAATTGAGTTGGAATTTTGATGGGGATAGTATTGAATCTGTA
GATTGCTCTTGGCAAGCCATTTTTGCTATATTAATCCTGCCAATCCTTGA
GCACGGGAGATCTGGTACTGATTTCTGTCTTAGAATTTCCATTAATGTGA
TAAATCACTGTATTAGTCAGGGTTCTCTTAAGTCACCAGAACTTATGGAA
TGAACCTCTGTATATAAAAATGGGACTTATTGGAATGACATACGGCCTGC
AATCCAGTCAATACAGC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAACCTGGAACCATGCTTTCATAT
TAAGATTTATCTTAAATTTAGACCCTTTTGAGTCATTTACATAAAACTCA
ACCCATTAGCACCCATTAGTATCAAAAGGTTCTTATGGGATTTGTGAGAC
TATTTTAAATCTTTGAAAACATGAGGTCTCCCTGAAGCTGGGACGCTTAG
AAAGCATGGTGGACGCTTGCTTTTCTCCCTTCTCCCAGCCTGCTGGGCTG
ATCCGCATTCAAAGGCTGGAGTAAAGTTAAAGAATCTGTGGTATCAAAGG
GTTTCACCGTTTCTATTTCACGCCCCACCGCCTGGTTCACAGCTGCAGAG
GCCCTGGATCAAGCAGAGCCAAATTTAGCAAACCAACACAATATCCCTTG
TTTCTGCAGGTTCTCTGATCTTTAGCTTTCAATGCTACATCATATCCTGA
GGTAAAATTGGTGTCATGAAACCAAAAATAGTTCACACATAATCGAGATT
TAACATAAAGTAAGCACCCAGCCCACTGATGAAGGAAGCTTTGTAACTGT
GAATCTTCTTGGTAAGTGCTCCTTGGCCCTTTTACTTAATTATCCAACCA
TTTCCTACAGCAGCTCCCTGGATAAAGCACCGAGGAGCAGTGAGGAGAGG
CTTCTGGCTTGGCGATTTAGCTAGTACAGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_b23.g1 MSMg01no320_b23.g1 CHROMAT_FILE:
MSMg01no320_b23.g1 PHD_FILE: MSMg01no320_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:34 2005
         (285 letters)



>mm_chr3_29047595_29048279
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaacctggaaccatgctttcatattaagatttatcttaaatttagacccttttgagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 485 attaacctggaaccatgctttcatattaagatttatcttaaatttagatctttttgagtc 426

                                                                       
Query: 61  atttacataaaactcaacccattagcacccattagtatcaaaaggttcttatgggatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atttacataaaactcaacccattagcacccattagtatcaaaaggttcttatgggatttg 366

                                                                       
Query: 121 tgagactattttaaatctttgaaaacatgaggtctccctgaagctgggacgcttagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgagactattttaaatctttgaaaacatgaggtctccctgaagctgggacgcttagaaag 306

                                                                       
Query: 181 catggtggacgcttgcttttctcccttctcccagcctgctgggctgatccgcattcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 catggtggacgcttgcttttctcccttctcccagcctgctgggctgatccgcattcaaag 246

                                                        
Query: 241 gctggagtaaagttaaagaatctgtggtatcaaagggtttcaccg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctggagtaaagttaaagaatctgtggtatcaaagggtttcaccg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)