BAC Information

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BAC

Clone NameMSMg01-320D23
Chromosome3 (Build37)
Map Location 40,018,452 - 40,018,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320D23.T7 (MSMg01no320_d23.b1)MSMg01-320D23.TJ (MSMg01no320_d23.g1)
ACCAG439534AG439535
length731732
length of high quality
(start - end)
234 (130 - 363)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no320_d23.b1 PHD_FILE: MSMg01no320_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:43 2005CHROMAT_FILE: MSMg01no320_d23.g1 PHD_FILE: MSMg01no320_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTGGTAACATAAGGAAAGATATCTCTAAGAACACTAGTTTCTC
TTGAAGAGTATCAGTTCTTGACCCTCAACAACCACAAGGTGATTTGCAAC
CATCTGAAACTCTAGTTCTAGGGGACCTAACATCTGCCTTCTGGCTCAGC
CAGCACCAGGCATGCATGTGGTATAGACATGCATGCAGGCAAAACACCCA
TTTACATGAAAAAAAGTAACAAATTAAAGATACTTTTCTGGGTTGGGTAT
AACATTCAAACACACTCCTCATGCCTATCTAAATGTGGTAGAGCAGGCCA
GTGAGGTTGGTATTTTTTCTTGCCCCCCCGCCCCACAAGGTTCAAACCAA
TTCTTTGGTGAGTCATTTCTTTGGAAGAATGACTCCTGAATGACTGACTG
CACAGCAGTAGAATCTATTCTCTGCCTCATACAAAACTTGGTGCTTAGAA
GGGGTCTGTGTCTGGCTTAGTGCTCTAATGTTATTGTCATATATTTGAAT
GTGGAGCCCCATGCTTTTATTTTTCACTTGGGGACATGAAACACTTGGCT
ATAGTTGGCTGATCTTTCATATAGGGACACTGTGGGAGATAGAGCTGTAA
CTATATCAGGCTTACAGGGGGAGCCTGAAGTGACATTTGCACCAACAGAA
TGGATCCACAGTGTGGGATGCAAATCTGACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTACAGATTGTGGGCAGTGCTGATAA
TGTCCACATCCATCCTATGGACCCAGTCCAAAAGACACCAGAGCACTGCC
AGGTGTCTAGTTAGTTGAATGAACTGGCTACAGAGGCATCCTGATGACAC
TCATAAGCACTCACATGCATCTTGGAAAGAGATTCCCCTGAGGGTTCAGC
TAATTATGACTTTAGAACAACTGCCTGTGTTCAGATGCCAACTGGGAGAT
TAAACCAGTGGCAGTGTCCATGTTATTTGCATATTAACACTACAGACAAT
GTGTCTCTGTNGATCGTCCTCACACACCCGCGCCAAGCCTCCAGAGAGTC
TCCTGCAATTCTGAGGGAACACAGATGATATACAAGGGGAGAGAGACAGA
CCCTGGAGATGACAATTTCAGAAGGCTCTTCTTTCAGACCATTTTGTTTG
CAAACCCAAGTCTTCCCTCACACTTTTTCTTACACACACAACACACACAC
ACACACACACACACACACACTGAGAGAGAGAGAGAGAGAGACAGACAGAC
AGACAGACAGACAGACTGACAGACAGTCAGACAGACTGACAGAGAGACCG
AGACAGATGAGTACACACAATAAGGGGGCAAGGGTAGAGAGACCGAGACA
GAGATAGACCGAGACCGAGAGTGACATAGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_d23.g1 MSMg01no320_d23.g1 CHROMAT_FILE:
MSMg01no320_d23.g1 PHD_FILE: MSMg01no320_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:43 2005
         (289 letters)



>mm_chr3_40018252_40018940
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtacagattgtgggcagtgctgataatgtccacatccatcctatggacccagtccaaa 60
           ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||
Sbjct: 201 ctgtacagattgtgggcagtgctgataatgtccacgtccatcctatggaagcagtccaaa 260

                                                                       
Query: 61  agacaccagagcactgccaggtgtctagttagttgaatgaactggctacagaggcatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaccagagcactgccaggtgtctagttagttgaatgaactggctacagaggcatcct 320

                                                                       
Query: 121 gatgacactcataagcactcacatgcatcttggaaagagattcccctgagggttcagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgacactcataagcactcacatgcatcttggaaagagattcccctgagggttcagcta 380

                                                                       
Query: 181 attatgactttagaacaactgcctgtgttcagatgccaactgggagattaaaccagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatgactttagaacaactgcctgtgttcagatgccaactgggagattaaaccagtggc 440

                                                          
Query: 241 agtgtccatgttatttgcatattaacactacagacaatgtgtctctg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtccatgttatttgcatattaacactacagacaatgtgtctctg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)