BAC Information

Click to search

BAC

Clone NameMSMg01-320O18
Chromosome3 (Build37)
Map Location 4,414,166 - 4,414,467
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320O18.T7 (MSMg01no320_o18.b1)MSMg01-320O18.TJ (MSMg01no320_o18.g1)
ACCAG440033AG440034
length712713
length of high quality
(start - end)
587 (122 - 708)263 (433 - 695)
definitionCHROMAT_FILE: MSMg01no320_o18.b1 PHD_FILE: MSMg01no320_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:33 2005CHROMAT_FILE: MSMg01no320_o18.g1 PHD_FILE: MSMg01no320_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTTGCGGAGGCAGGAGTGGATGGATGGGTGGGGGAAAACACTC
ATAGAAGCAGGTTTTGTTCGGATGGAATAGGGGTTCCCCAGGGGTGGGAA
CCAGGAAAGGGGATAACATTTGAAATGTAAATAAAATAAATCCAATAATA
ATTCATAAATGATGATATTAAATTATTTATGATGTAAAGTTTTATTTATT
TGCAAGTATCAAGTAATTATCTCTTATACTCAGAAATTATACTAGATTTT
ATTTATCATTTATAGAAAGTTATTTGAAAATAGATAAATATTTTTTATAT
TCCTAATATCTTCTTTATTTCCCATGCACAGTTTAAGAAATCAAACAAGT
GCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAG
GTGGGTGGATTTCTGCATTCGAGGACAGCCTGGGCTACAGAGTGAGTTCC
AGGACAGCCAGGGCTACACAGAGAAACCCTATCTCAAAAAACAAAAACAA
AACCAAAACAAACAAACAAAGAAAAAAACAAAAACAAAAAAACCCAAACA
AACAAAAAATAATTTGGTCTTTTGGTTATCGGTAAATGACAATGACATGT
GGATATTTATGTCTGTGGACAATAAATAGTTCTTAGTATAAGGTTATTTA
TTATAACCTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTACCA
TGAATGGGTGTTGGATTTTGTCCAATGCTTTCTCAGCATCTAACGAGATG
ATCATGTGATTTTTGTCTTTGAGTTTGTTTATATACTGGATTACGTTGAT
GGATTTCCGTATATTGAACCATCCCTGCATCCCTGGGATGAAACCTACTT
GGTCAGGATGGATGATTGTATTGATGTGTTCTTGGATTCGGTTAGCAAGA
ACTTTATTGAGGATTTTTGCATCAATATTCATAAGGGATATTGGTCTGAA
GTTTTCTATTTTTTTTTCGCCCCCCCCCGCCTTAGGTATCAGAGTAATTT
TGGCTTCATAGAATGAGTTGGATAAAATAAATTCTGTTTCTATTTTGTGG
AATAGTTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGATAGAA
CTTTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTAT
TAATGACTGCTTCTATTTCTTTGGTGCATATCGGGCTGTTTAGATCATTA
ACCTGATCTTAATTCATCTTTGGTACCTGGTATCTGTCTAGAAACTTCCC
ATTTCATCCAGGTTCTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAACGA
TCTAATGGTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_o18.b1 MSMg01no320_o18.b1 CHROMAT_FILE:
MSMg01no320_o18.b1 PHD_FILE: MSMg01no320_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:33 2005
         (587 letters)



>mm_chr3_4413481_4414467
          Length = 987

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Minus

                                                                       
Query: 286 cagtggtggcacacgcctttaatcccagcacttgggaggcagaggtgggtggatttctgc 345
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 cagtggtggcacatgcctttaatcccagcacttgggaggcagaggtgggtggatttctgc 928

                                                                       
Query: 346 attcgaggacagcctgggctacagagtgagttccaggacagccagggctacacagagaaa 405
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 attcgaggccagcctgggctacagagtgagttccaggacagccagggctacacagagaaa 868

                                                                       
Query: 406 ccctatctcaaaaaacaaaaacaaaaccaaaacaaacaaacaaagaaaaaaacaaaaaca 465
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 867 ccctatctcaaaaaacaaaaacaaaaacaaaacaaacaaacaaagaaaaaaacaaaaaca 808

                                                                       
Query: 466 aaaaaacccaaacaaacaaaaaataatttggtcttttggttatcggtaaatgacaatgac 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaaaaacccaaacaaacaaaaaataatttggtcttttggttatcggtaaatgacaatgac 748

                                                                       
Query: 526 atgtggatatttatgtctgtggacaataaatagttcttagtataaggttatttattataa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atgtggatatttatgtctgtggacaataaatagttcttagtataaggttatttattataa 688

             
Query: 586 cc 587
           ||
Sbjct: 687 cc 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)