Query= MSMg01no321_a12.b1 MSMg01no321_a12.b1 CHROMAT_FILE:
MSMg01no321_a12.b1 PHD_FILE: MSMg01no321_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
(292 letters)
>mm_chr3_147747479_147748167
Length = 689
Score = 398 bits (206), Expect = e-115
Identities = 265/292 (90%), Gaps = 16/292 (5%)
Strand = Plus / Minus
Query: 5 atgaagtatcaagacacagagcacactatctcatgataattattaaaatatagaatagct 64
||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 469 atgaagtatcaagacacagggcatactatctcatgatagttattaaaatatagaatagct 410
Query: 65 gtaagtgttgtgtgcttatatatatgtatat----gtattcatgactctctacgtaaaga 120
|||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
Sbjct: 409 gtaagtgttgtgtgcttataaatttgtatatatatgtattcatgactctctacgtaaa-a 351
Query: 121 aaaaaaaaccaattatatgagcaacaatggaattcagattatttttccagattagcaaaa 180
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 350 aaaaaaa-----ttatatgagcaacaatggaattcagattatttttctagattagcaaaa 296
Query: 181 atatcaagctcacagctcaaaagaagtccccaaaccataaagcataaggacaggggattt 240
|||||||||||||||||||||| |||| |||||||| ||||||| || ||||||||||||
Sbjct: 295 atatcaagctcacagctcaaaa-aagttcccaaaccgtaaagcacaatgacaggggattt 237
Query: 241 atattaaagcatattaaaactaaatgtataatgttataacttgtcaaaaatt 292
|||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 236 atattaaagcatattaaaactaaatgtataat-----aacatgtcaaaaatt 190
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 689
Length adjustment: 9
Effective length of query: 283
Effective length of database: 680
Effective search space: 192440
Effective search space used: 192440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_a12.g1 MSMg01no321_a12.g1 CHROMAT_FILE:
MSMg01no321_a12.g1 PHD_FILE: MSMg01no321_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
(243 letters)
>mm_chr3_147593761_147594403
Length = 643
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 1 cctgagttcttaagagttggcaacccagggtctctgatctaaacacaactcactgattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagttcttaagagttggcaacccagggtctctgatctaaacacaactcactgattta 260
Query: 61 attatttcattatagatttgtggaagctctttcagaccagtgacttagcatctgcattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attatttcattatagatttgtggaagctctttcagaccagtgacttagcatctgcattgt 320
Query: 121 atctagctgtacaggaaacgaaagttagaatgatgtaaatattttgtttcttagctgctt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctagctgtacaggaaacgcaagttagaatgatgtaaatattttgtttcttagctgctt 380
Query: 181 tcatttgaaaacttggacgtcacttcacatggaaaacaagcacaaaagaatgtgaaatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatttgaaaacttggacgtcacttcacatggaaaacaagcacaaaagaatgtgaaatcg 440
Query: 241 aga 243
|||
Sbjct: 441 aga 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
