XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCATCATTTGGAGACTTTTAGGGATAACTGTTTCTTCTTCTGGCTTGTGC
TCCTTTGCAGTATAACCTGAAATGAAATAATCTAGTTTCAGCATCACTTA
GCCTCAAAAGAGAGAAAAAGACTTTACTTGCTTATCAAGAGCAAAATCAG
TGAGGGTTTTTGTCTCAAGAAAAGGTGGTCCTTCTCAAGATACATTCATG
CAGCTGAATGGAGGGTAAGATGTTACTGTTCCAGATAAGGAGAGTGGGTA
AGTGAGCAGTGTGTAATGTGCTCATCATACATCATGAGGATCTGAGGTAA
ACCCTGATAATGTAGCTCACATTGCAATTCTTGCATGGGGAAGTAGAGAA
AGGGGAACGCCTGAAAGTCTGTGGGCCAGCTGGCCTTCATTATGCAGAGA
AAAGAACATGTGTGCAAACAGATTCTGAAATTACTATCTTCTTTGACACA
TTATAAAATTCTAAGGTCTATGGCCTTACATTTCTTTCACTAGTCTCTAA
TATTTCAAAAGTATTAGGATCTTAATGGACTGTGAAAATAATTTAGTGGC
CTAATACTTAGCAAGCATACTCACCTGTTGGTAAGTATGACTTATTATTT
ACTTTGCTTTTTGATAATATAATTTAATTATATCATTTCTCCATTACCTT
TTCTCTCTCAAACCTTCGCACAAAACTCTAATTGTTCTCTTTCCATTTTA
TT

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTCCTTTTTGGAGTCTTCCTGTGGTTAT
ATATCAGGGAGGCTGGTCCTCATAAATGAAGTCTGGCAGTGTTCCTTCTG
TTTCTTTTTTGTGGGATAGTTTGAGCAGTATTTGTTTTAGTTCTTCTTTG
AAAGTCTGATAGAATTCTCTGCTAATACCATCAGGCACCAGATTTTTTTT
TTGAGGAGGGGAGCAGATGTTAATGACTCCTTTGTTTACTTTAGGGGTTA
TAAGACTATTTAGATAGTTTACCTGCTCTTGATTTTTTTGTTGGTATCTA
TCTAGAAAATAATAGATTTCATTTACATTTTTCAATTGTGTAGCATACAA
ACTTTTGAGACACAACCTAATGATTCCTTGAATTTTCTCAGTGTCTGTTG
TTAAGACTCCTTTTTCATTTCTGATTTTGTTAATTTGGATACTGTCTGCT
TACCTTTTAAATTAGTTTGGCTAGGATTTTTTAATCTTGTTGATTTTCAT
AAAGAACCAGCTCTAGGATATTTTGATTCTTTGTGTCTATTTGATTTATT
ATAGCCCTGATTTTCTCCTGCTGCCTACTCCTCTTGGGTGTGTTTCCTTT
TTCTTCAATTTTTCCAACTTGACTTATATTTCTTCAATTGTATTTTCTTC
AATTTTTAGAACTTGTATTATCATATAATTCCCTAGTATGAGAATATTAT
T

Query= MSMg01no321_a20.b1 MSMg01no321_a20.b1 CHROMAT_FILE:
MSMg01no321_a20.b1 PHD_FILE: MSMg01no321_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:42 2005
         (714 letters)



>mm_chr3_44287325_44288441
          Length = 1117

 Score = 1207 bits (624), Expect = 0.0
 Identities = 691/714 (96%), Gaps = 5/714 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcatcatttggagacttttagggataactgtttcttcttctggcttgtgctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gaattctctcatcatttggagacttttagggataactgtttcttcttctggcttgtgctc 858

                                                                       
Query: 65  ctttgcagtataacctgaaatgaaataatctagtttcagcatcacttagcctcaaaagag 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctttgcagtataaagtgaaatgaaataatctagtttcagcatcacttagcctcaaaagag 798

                                                                       
Query: 125 agaaaaagactttacttgcttatcaagagcaaaatcagtgagggtttttgtctcaagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agaaaaagactttacttgcttatcaagagcaaaatcagtgagggtttttgtctcaagaaa 738

                                                                       
Query: 185 aggtggtccttctcaagatacattcatgcagctgaatggagggtaagatgttactgttcc 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 737 aggtggtccttctcaagataccttcatgcagctgaatggagggtaagatgttactcttcc 678

                                                                       
Query: 245 agataaggagagt--gggtaagtgagcagtgtgtaatgtgctcatcatacatcatgagga 302
           |||||||||||||  ||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 677 agataaggagagtctgggcatgtgagcagtgtgtaatgtgcttatcatacatcatgagga 618

                                                                       
Query: 303 tctgaggtaaaccctgataatgtagctcacattgcaat-tcttgcatggggaagtagaga 361
           ||||||||||||||||| |||||||||||||||| ||| | || ||||||||||||||||
Sbjct: 617 tctgaggtaaaccctgagaatgtagctcacattggaatat-ttacatggggaagtagaga 559

                                                                       
Query: 362 aaggggaacgcctgaaagtctgtgggccagctggccttcattatgcagagaaaagaacat 421
           |||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 558 aaggggaaggtctgaaagtctgtgggccagctggccctcattatgcagagaaaagaacat 499

                                                                       
Query: 422 gtgtgcaaacagattctgaaattactatcttctttgacacattataaaattctaaggtct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgtgcaaacagattctgaaattactatcttctttgacacattataaaattctaaggtct 439

                                                                       
Query: 482 atggccttacatttctttcactagtctctaatatttcaaaagtatt-aggatcttaatgg 540
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct: 438 atggccttacatttctttcactagtctctaatatttcagaagtatttaggatcttaaagg 379

                                                                       
Query: 541 actgtgaaaataatttagtggcctaatacttagcaagcatactcacctgttggtaagtat 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 378 actgtgaaaataatttagtggcctaacacttagcaagcatactcacctgttggtaagtat 319

                                                                       
Query: 601 gacttattatttactttgctttttgataatataatttaattatatcatttctccattacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gacttattatttactttgctttttgataatataatttaattatatcatttctccattacc 259

                                                                 
Query: 661 ttttctctctcaaaccttcgcacaaaactctaattgttctctttccattttatt 714
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 258 ttttctctctcaaacctttgcacaaaactctaattgttctctttcaattttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1117
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1107
Effective search space:   779328
Effective search space used:   779328
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)