BAC Information

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BAC

Clone NameMSMg01-321C11
Chromosome3 (Build37)
Map Location 5,159,687 - 5,159,918
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667709, LOC620283
Downstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321C11.T7 (MSMg01no321_c11.b1)MSMg01-321C11.TJ (MSMg01no321_c11.g1)
ACCAG440200AG440201
length693729
length of high quality
(start - end)
233 (122 - 354)428 (70 - 497)
definitionCHROMAT_FILE: MSMg01no321_c11.b1 PHD_FILE: MSMg01no321_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005CHROMAT_FILE: MSMg01no321_c11.g1 PHD_FILE: MSMg01no321_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATATATGCACATTTTCATATAACTTACTTAAAATTAAGTATACTTT
TTAATCAGACATGTTTAATCTGAACACTTATTAATAGATCATTAATAAAA
CATGTTCATGGAATAAAATTTCAAGGAATAGGTAATATGAACGAAATACA
ACAAAAATGAAACAAATATAATGGTTAATGTTTAATTTTATTTTAAACAC
TTTATTTTAAATTGCATATTTACTTCACATTAAAAATGAATTGCTAATAT
TTTTCGAGTGAACCTTGTAGATAAAATACCATAGATAATATCAGAATTCA
TTATCCTGTTTATTCTGCCACAACGCCGTCCTACTTTATTGACACTCAAC
ACTTGAAAATATAATGGCCCCTCCCCTCCATTAAAAAAATTTCTGGGCCT
AACCTGGGAAAAAAAAAAAGGGTATTAAAATTTTTGTTTCTTTAAACACG
GGTAAATGGAAAAACGGAATTTTTTTCCTCGTAAAAAAATTTCCCCATAA
CCCCCGGGGTTTTCTCCAGGGGAAACCCCCCAATTTTTTTTTTTTTCTTT
TCCCTTTATATAACCTTTTTGTGGGGTTTTTTCTCCCCTATGCCCTTTAA
ACTATCCTGCCTGTAGCAAATAAAATTAAGGGTTTCCCCCTTA
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTACTTTTGTGTGTGTGTGTGTGGCTAATA
TCCACTTTTAGTGAGTACATACATACCATGCATGTCCTTTTGAGTCTGAG
TTACCTCACTCAGGATGATATTTTCTAGTTCCATCCATTTGCCTGCAAAA
CTCAGGATCTCCTCAATCTTACTAGCTCAATAGGATTCCATTGTGTGAAA
TAACCCCATTTACTGAATCGATTCTTCTGTCATAGGAGATCTGGGTGTTT
TCCAGCTTCTGGCTATCACAAATAAGGCCACTATGAACATAGTGAAACAT
GTTCCCTATCCTGTGGCATTGTGGGGCAACTTTTAGGCATATTCCCAAGA
GAGCCACAGCTGGGTCTTCAGGTAGATCTATTTCCAATTTTCTGAGGAAC
CTCTAGATTGATTTCCACAGTGGTTGTACAAGTTTGTAATCCCACCAGCA
ATGGAGGGTTTTTTCTCTTCCTTCACATGAAACTGGAAAGCTTCTGTAAG
GCAAAGGACATATCAGTAAGACAAATCCGCAAAGGACAGATTGAGAAAAA
AAATCTTCACTAACCCCACATCTGACACCGGTCTAATATTCCAAATATAT
AACGAACTCCAGAAGCTAACCTCCTAAAAGTCAAGCGATTCCATCAAAAT
ATGGCGTATAAAAGTAAACTGAGAGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_c11.b1 MSMg01no321_c11.b1 CHROMAT_FILE:
MSMg01no321_c11.b1 PHD_FILE: MSMg01no321_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:50 2005
         (233 letters)



>mm_chr3_5159487_5160118
          Length = 632

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%), Gaps = 1/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacacttattaatagatcattaataaaacatgttcatggaataaaatttcaaggaatag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 432 gaacacttattaatagatcattaataaaacatgctcatggaataaaatttcaaggaatag 373

                                                                       
Query: 61  gtaatatgaacgaaatacaacaaaaatgaaacaaatataatggttaatgtttaattttat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 372 gtaatatgaacgaaatacaacaaaaatgaaacaaacataatggttaatgtttaattttat 313

                                                                       
Query: 121 tttaaacactttattttaaattgcatatttacttcacattaaaaatgaattgctaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttaaacactttattttaaattgcatatttacttcacattaaaaatgaattgctaatatt 253

                                                                
Query: 181 tttcgagtgaaccttgtagataaaataccatagataatatcagaattcattat 233
           |||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttcgagtgaacattg-agataaaataccatagataatatcagaattcattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)