Query= MSMg01no321_k20.b1 MSMg01no321_k20.b1 CHROMAT_FILE:
MSMg01no321_k20.b1 PHD_FILE: MSMg01no321_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:28 2005
(322 letters)
>mm_chr3_33197476_33198197
Length = 722
Score = 532 bits (275), Expect = e-155
Identities = 305/315 (96%)
Strand = Plus / Minus
Query: 5 gaattcaggaaagctgactcaagatcagcatgaaatatgctgaattttcaaatccactgg 64
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcaggaaagcagactctagatcagcatgaaatatgctgaattttcaaatccactgg 460
Query: 65 gttatgaaccacatcccagaattctgaccacctcttcctcaagagtaggcatttccacac 124
||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 459 gttctgaaccacatcagagaattctgaccacctcatcctcaagagtaggcatttccacac 400
Query: 125 atttaacgccattagcgcctcacctgttatctaactaatgctctcagatctttttgtcag 184
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 399 atttaacaccattagcgcctcacctgttatctaactaatgctctcagatcttttcgtcag 340
Query: 185 cttggcctccaagtctaggtacatttaaaactgagaccttggatcttgttcctatcatcc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 339 cttggcctccaagtctaggtacatttaaaactgagaccttggatcttgttcctatcattc 280
Query: 245 ctgtcactcaaggaacttgggacttgcagttggaagatttagtggcagatacttcatttg 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctgtcactcaaggaactttggacttgcagttggaagatttagtggcagatacttcatttg 220
Query: 305 gtatgcacaatttaa 319
|||||||||||||||
Sbjct: 219 gtatgcacaatttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no321_k20.g1 MSMg01no321_k20.g1 CHROMAT_FILE:
MSMg01no321_k20.g1 PHD_FILE: MSMg01no321_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:28 2005
(628 letters)
>mm_chr3_32966514_32967541
Length = 1028
Score = 1077 bits (557), Expect = 0.0
Identities = 603/627 (96%), Gaps = 16/627 (2%)
Strand = Plus / Plus
Query: 13 ttaatgcaaatttttgcttcagtcacccttaggaagtacaatgctggtaactgctacaca 72
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 213 ttaatgcaaatttttgcttcagtcacccttaggaagtagaatgctggtaactgctacaca 272
Query: 73 taatttgggttaaacctgaagccttagggagcaatgtgacatgtgtgacaatttccaaca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taatttgggttaaacctgaagccttagggagcaatgtgacatgtgtgacaatttccaaca 332
Query: 133 ggatggtagagattacccagtgcagaccctacaaacaaacagcatatggaattcatggaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggatggtagagattacccagtgcagaccctacaaacaaacagcatatggaattcatggaa 392
Query: 193 gaccaacatgtatctacctacaggcctcgaataactctgctgcaatttttttgctacttt 252
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gactagcatgtatctacctacaggcctcgaataactctgctgcaatttttttgctacttt 452
Query: 253 cttcagtttaatgagttgcatcctctaaatgaaaggggagattatttgcatgatcactgc 312
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cttcagtttaatgaattgcatcctctaaatgaaaggggagattatttgcatgatcactgc 512
Query: 313 acaagtgaagggaaagctcggttgaaatgcccccc-----atccttgattctaaggtggc 367
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 acaagtgaagggaaagctcggttgaaatgc-----ttaagatccttgattctaaggtggc 567
Query: 368 cattaaaatgcactcatacacacgcagtagaaaatgagaagacaaagaatggaatgtttg 427
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 568 cattaaaatgcacccatacacacgcagtagaaaatgagaagacaaagaatgtaatgtttg 627
Query: 428 ctgagtgcaacaatacgaaatattcatgagtatgcaagaatgagacatcaatgcatcctc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctgagtgcaacaatacgaaatattcatgagtatgcaagaatgagacatcaatgcatcctc 687
Query: 488 atgaccaaggcaatgctttatctcgtgc------atgtgcatgcatctgtgtgtgtctca 541
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 688 atgaccaaggcaatgctttatctcgtgctcgtgcatgtgcatgcatctgtgtgtgtctca 747
Query: 542 ctggcctagaattcaccaagtaggaagcaggctctgctggctgctcagtaagccgtaggg 601
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 748 ctggcctagaattcaccaagtaggaagcaggctctgctggctgctcagtgagccctaggg 807
Query: 602 atctttctgtcccttcctccattagtt 628
|||||||||||||||||||||||||||
Sbjct: 808 atctttctgtcccttcctccattagtt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
