BAC Information

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BAC

Clone NameMSMg01-322C08
Chromosome3 (Build37)
Map Location 29,725,078 - 29,725,360
singlet/doubletsinglet
Overlap geneLOC100040676
Upstream geneGm1527, 6130401L20Rik
Downstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322C08.T7 (MSMg01no322_c08.b1)MSMg01-322C08.TJ (MSMg01no322_c08.g1)
ACCAG440922
length728712
length of high quality
(start - end)
---283 (58 - 340)
definitionCHROMAT_FILE: MSMg01no322_c08.b1 PHD_FILE: MSMg01no322_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:02 2005CHROMAT_FILE: MSMg01no322_c08.g1 PHD_FILE: MSMg01no322_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATTGAACCTAAGCTGCAGATCTGAAAACTTAACTCATTCAAAGG
AAACCAAAAGGTCTCCATTTCCTCAGAGCAGCCAGAATGGTTCTTTAGTT
TGTTTGTTTGCTGAGGATCGCATGACCCTCCAAGGAGAACGTGTAAGACT
CAGGAGACTCGTTGATTTTTCAGTGTTGAAAACAAATGACATGATAACTG
GACAGGCTTGGATCCAGAGGGGGCAACAACAAACAAAATCAAGAGGTACT
TTTTCTGTACTGTTGAAGTTTGAAAAATCCATTACCAAGTCTTGTTTTTA
ACCCCCCTCCCCCCCCATATCATCTAAGGTCGACCGTTTCCAATCACTGC
CCACCCCACCCATATATATGCTCGAGTGGTTCCAGGAACAACAGAAGACC
ATACACTGCTTCAATGCCAAGGACAAGAAAGGCAACCCAGCCTGTCGGCC
TGACTTCCCCTCACTCAACCCCAACACTTCAGGCTTCGCTTCCCTGCCCA
GATGAGTTATATCTTTGAGAATAGATTTTTGAAGCCTAGGTCTTTGTTGT
TCAACATGTCCTTCAGCTCTCTTGTAGTCTATCTGTTGCTTTCATAGGCC
TTGTTCACAACAAGTATTTGAGGGTCACTATATTTTGTGTCTTCCCTTCC
ATGTTATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_c08.g1 MSMg01no322_c08.g1 CHROMAT_FILE:
MSMg01no322_c08.g1 PHD_FILE: MSMg01no322_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:03 2005
         (283 letters)



>mm_chr3_29724878_29725560
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaacctaagctgcagatctgaaaacttaactcattcaaaggaaaccaaaaggtctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgaacctaagctgcagatctgaaaacttaactcattcaaaggaaaccaaaaggtctcca 424

                                                                       
Query: 61  tttcctcagagcagccagaatggttctttagtttgtttgtttgctgaggatcgcatgacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttcctcagagcagccagaatggttctttagtttgtttgtttgctgaggatcgcatgacc 364

                                                                       
Query: 121 ctccaaggagaacgtgtaagactcaggagactcgttgatttttcagtgttgaaaacaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctccaaggagaacgtgtaagactcaggagactcgttgatttttcagtgttgaaaacaaat 304

                                                                       
Query: 181 gacatgataactggacaggcttggatccagagggggcaacaacaaacaaaatcaagaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gacatgataactggacaggcttggatccagagggggcaacaacaaacaaaatcaagaggt 244

                                                      
Query: 241 actttttctgtactgttgaagtttgaaaaatccattaccaagt 283
           ||||   | ||||||||||||||||||||||||||||||||||
Sbjct: 243 acttcaacagtactgttgaagtttgaaaaatccattaccaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)