BAC Information

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BAC

Clone NameMSMg01-323B19
Chromosome3 (Build37)
Map Location 86,214,877 - 86,215,189
singlet/doubletsinglet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323B19.T7 (MSMg01no323_b19.b1)MSMg01-323B19.TJ (MSMg01no323_b19.g1)
ACCAG441624AG441625
length1,2511,260
length of high quality
(start - end)
634 (129 - 762)313 (479 - 791)
definitionCHROMAT_FILE: MSMg01no323_b19.b1 PHD_FILE: MSMg01no323_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:18 2005CHROMAT_FILE: MSMg01no323_b19.g1 PHD_FILE: MSMg01no323_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATTANNNNNNNGTCAGTGCGCGCTAAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTAAGGCCAGCCTAGGCACCATGTTAACACCTTATGATTGA
CAAACCTGCTCAGCCATGCCTTGAACAGTGTGACATGGTTCTTGTCCCTG
GAACAGAGCCAGCAGGGTGTGGGCCTTCATGAGTGTTGATGATTGCTGTG
TAAGGCCTGTTTTGTATATTAAAAAATGTATTTGTGTGTGTGAATATATT
TCACACACACAAATATATATATATATATATTTTTTTTTTTAACTTCACTT
TCCTCATTTGAGGAACATCCTTCCTGCCAACATTAATGATTCCATGATAG
TCAGAGACAGCAGGTATCCAGGAGCCGAGGATGTGGCTAATGTCTTAGCA
AAATGGTATCATTCTGTGACCTTCAGGACAGCTCTTAAAAGACTATGGGA
AAGAATGCTGAATACATGAGTTCAACAATATATACTTTCTCAGCTATACA
AAATGTAAGGATGCAATATGAATTATATAAGGAGCTTCACAGATCTAAAG
GAACAGAGGCAGCTGCACTATGAGTGAGCAGTCTGGAAAAGCTGTCTTGA
GCAGAACATAGGCTTGTAACCCACAATTTGACTTTGAGTCATTTGTTTTG
TCTTTTTGCAGACCTTCCTTCTCTCAGGAACCCCTCCTCAAGCCCAGGCT
GGTCTTTGGCACAAACCTATAAATCCCTCTCTCCTAAGTACTTTAAATTG
GNCTGATGATAGCAGAGAATAAAATAGTTTGTAAGATCTAGAATAAATTG
GGAAACTTAGCCTTCACTATATAATGAACTTATGACATGACTAACGAATG
AATTTTTGTCACCTGCAATAGTTACCTGTATACTTTCAGGGAGTGAGGAG
TTACATATTTTCTATTAAAAATGTATAGGGAAGATATTAAGAATAAGAAG
GGTCCATAAAATCTGGCCTGGTTTTATCCCAAAGGTTAAAAAAAAGAAAA
GCTTATGGGACATCTAGAACAGGCTTTCCCACCCATAAGTTTGGCCCCCG
GGGAAATCTTTCCCCCTTTTCTAGCCCCCTCCCAAAAAAACGCCATTTTT
TTTCCGGTTTAACAAGAAACAAAATTTTTGTTTTGTAAATACCATGAAAA
ATATTTTTTTTTTGGGGTTTATACTCTTAACTGACACTTTTTACGGGTCT
CCTATTTAAGATTTAAAAACCCCCCCTTCCCCCGGGCGAAGAGATCCTCG
T
NCCAGCCCTTNNNNAACCGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTCAGTGTCCCTCNGAGNN
NNANNNNNNNNAANANNNCCCTTTAAAAACCCCCCNNAANNANATTNCNA
AGGGTATCCCAAAAGTCCCCCATACCCTCCCCCTCACTTCCCTACCCACC
CATTCCCATTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAG
TTTGTGTGTCCAATGGGTCTTTCTTTCCAGTGATGGCCGACTAGGCCATA
TTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACACTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATT
AGCCCAAAACTTTTTTTACCCAAGATATAAGATACAATTTGCTAAACACA
TGAAACTCAAGAAGAATGAAGACTGAACTGTGGACACTATGCCCCTCCTT
AGAATTGGAAACAAAACACCCATGAAAGGAGTTACAGAGACAAAGTTTGG
AGCCCCATTTTTTAATGGGGTTATTTAGCCAGAGATAGTTCGAGGCTGCA
GGTCAGAATCTTCCACATCTTCTGTCCCATTATTCAAAGTGCAGATAGGA
TTCATAAAAAAAGAGTATAATGTCATATAAAAATGGAAAGCATTTATTTT
TAGGACTTCTATTTTTGTTTCTTTTCATTATTGCTTGTACAACCTCAGTG
AATATATACCTAGGAGGAGGAGGAACAGCCTCTTTCTCTAGTCTAGTTGT
GTGCAAGTGCTCTTTGTAAAGGACCAAATAATAATGTAGGGTTTGTAGAA
CATATAGCTTCTGCTACAGCTGTTCAGCTCAATATAATCCTACGAATTGG
AAACCAACACAGGTGATACTTAAACAAGTGATCTTGTTAGACTTTATTAA
CAAATATTCAGGGGGCCCACTTGGGCCACGGCTGTAATTTGTTGACCTCC
TATAAAATAACAAGCAATTGGAAAAATTTTCCTTAAAATTTTCCCCAAAC
CAATATTTTTTATCCTAACCTGGAATTTTTTTGGGTAAACAAAATCCAAA
GGCCCTTTGCTCTTGGGGGGGCAATTTGGGCCCCCCAAAGTTTTTTTAAT
TTTTATTTTTAAAAAATTTTTATGGGAAAACAAAATTTGTTTTCTCCTCT
CTCAGAACAAGGGTCCCCCGGAAAGGGTCAAAAAAAAAAAAAATCTCCTT
TTGGCCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_b19.g1 MSMg01no323_b19.g1 CHROMAT_FILE:
MSMg01no323_b19.g1 PHD_FILE: MSMg01no323_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:18 2005
         (313 letters)



>mm_chr3_86214579_86215291
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggacactatgcccctccttagaattggaaacaaaacacccatgaaaggagttacaga 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 611 tgtggacactatgcccctccttagaattgggaacaaaacacccatgaaaggagttacaga 552

                                                                       
Query: 61  gacaaagtttggagccccattttttaatggggttatttagccagagatagttcgaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gacaaagtttggagccccattttttaatggggttatttagccagagatagttcgaggctg 492

                                                                       
Query: 121 caggtcagaatcttccacatcttctgtcccattattcaaagtgcagataggattcataaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 491 caggtcagaatcttccacatcttctgtcccattatacaaagtgcagataggattcataaa 432

                                                                       
Query: 181 aaaagagtataatgtcatataaaaatggaaagcatttatttttaggacttctatttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaaagagtataatgtcatataaaaatggaaagcatttatttttaggacttctatttttgt 372

                                                                       
Query: 241 ttcttttcattattgcttgtacaacctcagtgaatatatacctaggaggaggaggaacag 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 ttcttttcattattgcttgtacaacctcagtgaatatattcctaggaggaggaggaacag 312

                        
Query: 301 cctctttctctag 313
           |||||||||||||
Sbjct: 311 cctctttctctag 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)