Query= MSMg01no323_m21.b1 MSMg01no323_m21.b1 CHROMAT_FILE:
MSMg01no323_m21.b1 PHD_FILE: MSMg01no323_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:46 2005
(739 letters)
>mm_chr3_136763661_136764795
Length = 1135
Score = 1355 bits (701), Expect = 0.0
Identities = 729/741 (98%), Gaps = 8/741 (1%)
Strand = Plus / Minus
Query: 1 catgctgagacttcatggaggtagcttcag-c-cttacagctaagtggcacaatctctct 58
|||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 1089 catgttgagacttcatggaggtagcttcagtcac--acagctaagtggcacaatctctct 1032
Query: 59 gtagagttcctggtcttctgactttcactatccttctgacccctctactgagacagtccc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 gtagagttcctggtcttctgactttcactatccttctgacccctctactgagacagtccc 972
Query: 119 tgaggagctgtgctggacatgtatcagttggagctgcttcaatttccataatgtctgtga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 tgaggagctgtgctggacatgtatcagttggagctgcttcaatttccataatgtctgtga 912
Query: 179 tccactcaaacatcttgataattaaaatgactgcttactatgtcactcatgcctcccaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 tccactcaaacatcttgataattaaaatgactgcttactatgtcactcatgcctcccaca 852
Query: 239 acatcatccattttcatcactcaattagcgaagacattggtctccttgattgtaagatgt 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 gcatcatccattttcatcactcaattagcgaagacattggtctccttgattgtaagatgt 792
Query: 299 actgtcactatttgggtcgggggggggtgtgcacattaaaataaagggatgcgctttgca 358
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 791 actgtcactatttggggcgggggg----gtgcacattaaaataaagggatgcgctttgca 736
Query: 359 atgattgtttatcatggagtaattacagagcccttgcagttagtctctatatttcaagaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atgattgtttatcatggagtaattacagagcccttgcagttagtctctatatttcaagaa 676
Query: 419 cttctatttttcttctcctctggatccagcagttctttgttttaatttacattcctttta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cttctatttttcttctcctctggatccagcagttctttgttttaatttacattcctttta 616
Query: 479 aatacctcctgctatttaagcaataattccttctaaatcaattgttagcagcagttaatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aatacctcctgctatttaagcaataattccttctaaatcaattgttagcagcagttaatg 556
Query: 539 actggttcgttaattaatagctcaaagcaaagctgagggtgttctctgctccagcaaggc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actggttcgttaattaatagctcaaagcaaagctgagggtgttctctgctccagcaaggc 496
Query: 599 atcagcctctagctggggtattactgcttctgtaccctttaatcagtggctactcacagc 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 495 atcagcctctagctggggtattactgcttctgtaccctctaatcagtggctactcacagc 436
Query: 659 ctcactaccacatattatttaagctacaagaatgaattgaatgggaaatagattacatca 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctcactaccacatattatttaagctacaagaatgaattgaatgggaaatagattacatca 376
Query: 719 ttatcaaacctaatataataa 739
|||||||||||||||||||||
Sbjct: 375 ttatcaaacctaatataataa 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1135
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1125
Effective search space: 820125
Effective search space used: 820125
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_m21.g1 MSMg01no323_m21.g1 CHROMAT_FILE:
MSMg01no323_m21.g1 PHD_FILE: MSMg01no323_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:46 2005
(704 letters)
>mm_chr3_136575350_136576448
Length = 1099
Score = 1152 bits (596), Expect = 0.0
Identities = 679/732 (92%), Gaps = 44/732 (6%)
Strand = Plus / Plus
Query: 1 tgaagtggttagatctgaacaaaggttactttacaatttaaaggcaactattcaaaggaa 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 184 tgaagtggttagatctgaacaaaggttaaaatacaatttaaaggcaactattcaaaggaa 243
Query: 61 cgtctaactaaggctttcaaactgttgctggctctgttgaattcacagaactgagcctaa 120
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 cgtctaactaaggctttcaagctgttgctggttctgttgaattcacagaactgagcctaa 303
Query: 121 gtagcactggaagtaaaagctaattttgatggttcaaaccgaggcacggcatgcatgaca 180
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 304 gtagcactggaagtgaaagctaattttgatggttcaaaccgaggcacggcgtgcatgaca 363
Query: 181 cgtaggcataaccagtcagtttgaggagaaggccttctcttcactgtgtgttggagtaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cgtaggcataaccagtcagtttgaggagaaggccttctcttcactgtgtgttggagtaca 423
Query: 241 aatggcaagattaactctaagtgcccaacagagtttgaaaaaagatgaggctttcaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aatggcaagattaactctaagtgcccaacagagtttgaaaaaagatgaggctttcaaata 483
Query: 301 agaaatctgggctgatgagagactcatagtggtgtgtgcattgtgagggaattaggtctc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agaaatctgggctgataagagactcatagtggtgtgtgcattgtgagggaattaggtctc 543
Query: 361 caggattgcttccagaggaggaagaattaaaaagaattaaaaagaggaaaattgaaggct 420
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 544 caggattgcttccagaggaggaagaattaaaaaga----------ggaaaattgaaggct 593
Query: 421 ggtccttaaaaaccaatgcttctggaagaaggtgagcaaaagaaggcaaccaagtaaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggtccttaaaaaccaatgcttctggaagaaggtgagcaaaagaaggcaaccaagtaaggg 653
Query: 481 agacggagggaccctgtcaggagctg---------------------gag------aggc 513
|||||||||||||||||||||||||| ||| ||||
Sbjct: 654 agacggagggaccctgtcaggagctgcagatggaaggaccctgtcaggagctggggaggc 713
Query: 514 agggcgagggagcaggctggacacagctgtttgaaggtgtttgcacacaatactgcaaat 573
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agggcgagggaacaggctggacacagctgtttgaaggtgtttgcacacaatactgcaaat 773
Query: 574 ggaatgggagaaaatgacctctcaagacagtagctttagactccaggctatgcagcatgg 633
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 774 ggaatgggagaaaatgacctctcaagacagtagctttagactcca-----tgcagcatgg 828
Query: 634 agggctgtgtggaagggctc-anaggacagaaaaggaaggaaaaaaatgttaaaatgatg 692
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 829 agggctgtgtggaagggctcga-aggacagaaaaggaaggaaaaaaatgttaaaatgatg 887
Query: 693 taatcctgtcaa 704
||||||||||||
Sbjct: 888 taatcctgtcaa 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1099
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1089
Effective search space: 755766
Effective search space used: 755766
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
