CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGATTAGCTAGGGATATGTAATGAGGTCCTCACAAACCACAACC
ACAACCACCACAACAACACCAACAAATGCAGAGTGGTGGTGGGGTCTTTG
AGTTAGAAAAGCCACAGCCCAGCCCATTCAGATACTGATTAAGTGGGAAT
TAAAAGGCTTTGTGATCTTTCAATTCTTGATTAGACTTATAGACAAGGAG
AAGAGGCCAAATGGTCTACACCGAGAGCTCCCTATGTTCCTTGTCACCAC
CAGACATGATGGCATTATGCAATACCAATCTTATAGCTTTATAGTTGACA
AAAGAAGGCTCTCCTGCACTGTCACTTGCCCTGCCCTGTCCTGCTCTGTG
CTGTGATAAATGATGACATCACACCGCACTGAATCTGGCCCCAATCTGTC
TGCAAAGTTCTGCCCTTATGGTTCGAAGAATGTTACCCCTTTGAACTAAA
GCAATCTCTTTCTTCTTTCTGCAAAGTGCTCTAGGATGGTTGTGCTCTAA
GGCTCCCCATAACCACAATCCTATAATTCCACCCTCTTTAAGTGTCCACA
TATAAGTCTTACTAAGCTTTTTAAAGGCTTCATAGGTCATTCTCCAAAAG
AAGTGCCCACATTATGGTTGGCTCATCACCATAGGTCCTTTGAAAAGTCA
AGGATACCCAAAGAGTAAATGTGTATACAATTTGGGCTA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACGTCATTTTT
TAATAAGGTTGTTTGGTTCTCTGGAGTCTAACTTCTTGAGTTGTTTATAT
ATTTTGGATGTTAGCTCTCTATCAGATGGAGGAATGTTAAGACCTTTACC
CAATCTGTGGTAACCATTTTGTCTTATTGACAGTATCCTTCACCTTACAG
AAGCATTTCGATTTTATGAGGTCCCATTTGTCAATTGTTGATCTTAAAGC
ATAAGCCACTGGTGTTATGTTCAGGAAATTTTCCCCTGTGCCAATGTGTT
TGAGGTTTTGTCCCACTTTCTCTTCTATTAGATTCATCCTATCTGGTTTT
ATGTGGATGTTCTTGATCCACTTGGACTTGAGCTTTATACCAAGAAATAA
GAATGGATTAATTTGCATTCTTCTATATGCAGACCACCAGATGAACCAGA
ACCATTTTTTGAAAATGCTGCTTTTTTTCCCTGGGTGGTTTTGACTCCTT
TGTCAAAGATCAAGTGACCTAAACTGTGTGGGTTCATTTGTGGGTCTTCC
ATTCTATTGCATTGATCTTCAGGCCTGTCTCTGTACCAATACCATGCAGT
TTTTATCACTATGGCTCTGTAGTACAGCTTGAGGTCAGGAATGGTGATTC
CCCCTGAAGTTCTTTTATTGTTAAGAATG

Query= MSMg01no324_m14.b1 MSMg01no324_m14.b1 CHROMAT_FILE:
MSMg01no324_m14.b1 PHD_FILE: MSMg01no324_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:11 2005
         (694 letters)



>mm_chr3_109967318_109968407
          Length = 1090

 Score = 1286 bits (665), Expect = 0.0
 Identities = 683/691 (98%), Gaps = 4/691 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagattagctagggatatgtaatgaggtcctcacaaaccacaaccacaaccac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagattagctagggatatgtaatgaggtcctcacaaaccacaaccacaaccac 263

                                                                       
Query: 64  cacaacaacaccaacaaatgcagagtggtggtggggtctttgagttagaaaagccacagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacaacaacaccaacaaatgcagagtggtggtggggtctttgagttagaaaagccacagc 323

                                                                       
Query: 124 ccagcccattcagatactgattaagtgggaattaaaaggctttgtgatctttcaattctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagcccattcagatactgattaagtgggaattaaaaggctttgtgatctttcaattctt 383

                                                                       
Query: 184 gattagacttatagacaaggagaagaggccaaatggtctacaccgagagctccctatgtt 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 gattagacttatagacaaggagaagaggccaaatggtctacactgagagctccctatgtt 443

                                                                       
Query: 244 ccttgtcaccaccagacatgatggcattatgcaataccaatcttatagctttatagttga 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttgtcaccaccagacaagatggcattatgcaataccaatcttatagctttatagttga 503

                                                                       
Query: 304 caaaagaaggctctcctgcactgtcacttgccctgccctgtcctgctctgtgctgtgata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaaagaaggctctcctgcactgtcacttgccctgccctgtcctgctctgtgctgtgata 563

                                                                       
Query: 364 aatgatgacatcacaccgcactgaatctggccccaatctgtctgcaaagttctgccctta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatgatgacatcacaccgcactgaatctggccccaatctgtctgcaaagttctgccctta 623

                                                                       
Query: 424 tggttcgaagaatgttacccctttgaactaaagcaatctctttcttctttctgcaaagtg 483
           ||||||||||||||||||||||||||||||||| ||||||||    ||||||||||||||
Sbjct: 624 tggttcgaagaatgttacccctttgaactaaagaaatctctt----ctttctgcaaagtg 679

                                                                       
Query: 484 ctctaggatggttgtgctctaaggctccccataaccacaatcctataattccaccctctt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctaggatggttgtgctctaaggctccccataaccacaatcctataattccaccctctt 739

                                                                       
Query: 544 taagtgtccacatataagtcttactaagctttttaaaggcttcataggtcattctccaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taagtgtccacatataagtcttactaagctttttaaaggcttcataggtcattctccaaa 799

                                                                       
Query: 604 agaagtgcccacattatggttggctcatcaccataggtcctttgaaaagtcaaggatacc 663
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agaagtgctcacattatggttggctcatcaccataggtcctttgaaaagtcaaggatacc 859

                                          
Query: 664 caaagagtaaatgtgtatacaatttgggcta 694
           |||||||||||||||||||||||||||||||
Sbjct: 860 caaagagtaaatgtgtatacaatttgggcta 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1090
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1080
Effective search space:   738720
Effective search space used:   738720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)