TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGAGTTAGATCAAACCAAACCAAACCAAACCAAACCAAACCAA
AAAACAGTTAACCCAATTAAAAGATGAGCTACAGAGCTAAACAGGGAATT
CTCAACAGAGGAATCATGAATGGTCTAGAAGCACTTAAAGAAATATTCAG
CATCCTTAGCCATGAGAGAAATGCAAATTAAAACAACCTTGAGATTCCAC
CTTACGCTAATCATAATGGCTAAGATCAAAAACTCGAGTGACAGTACATT
CAGAAGGATGTGAAGAAAGAGGAACATTCCTCCATTGATGGTGGGATTAC
TTACTGGTATAATCAATCATAAAATCATTCTGGTGTTTCCTCAGAAAATT
TGAAATAGTACTACTTCAAGACGCAGCTATACCGCTGCTGGACTTGGGTA
TACCCAAGAGATATTCCACCATACTATAAGGATACCACAATGTTCATAAC
AGCCCTATTTGTAATAGCCACTGGTTGGAACCAATCCAGATGTCCCTCAA
TGGAAAAATTGAATAAAGAAAATCTTGTTCATTTACACAATGGGATACTA
TTTAGCTATTAAAAATAAGAACATCATGAATTTTGAAGGCAAATGGATGA
AACTAGAAAGGATCCTGAGTGAGGGAATCCTGACCCAAAAGGACATACAT
GGTATATATTCACTGATAAGTGGATATTAACCAAGATAT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCTAGTTCAAAGCTGAAACCTTCAGAA
AAGAAAAATGAATTAAGTTTATAGGTATTCCAAGGTTAAATGGGCTGAAC
TTATGCTCCAAAATTTACTGTCATGTCTGAGAAGTTTTAAAGGTACTTCA
GGAAATTGGATTTTTATGCTTCCATTTCAGTGCTCAAAAATAAAACATTT
AAAATATATAACAAAATAAAATATTTTGACTTCTGTCATAAACAGAATTA
AGAGTTAGCAGTATGGCCAAATTTGAAATTCTTATACATATGAATGCATA
GAATCATAGTACAACAATATTAGTTATTTTTCTCAGTGTTTATTTTAATT
AATTTTATGGTGCTTTGGGTTTTCTGATTTCTACATGTAAGCTTTTAATG
TTTTATAGCACTATTTAAAAATCATTTTCTCTGATTCTTTTGTTGATAAC
ATTGATAGTGTCTGGGCTAACTATGGAAAATGAGGTTGAATACTGTATGA
CGAATTCCTTTTCCCTATGTGTTAGCTTTCATTTGTGTTGTAATTGCTCT
CAGTGAACAAGTGTGTCCCATAGCAACAGATTCTTTGCTAAAAAATATTA
TGTGATAATAAAGCATAGTANAACGACTGGTTTTGTGTTTCTGTCTCATG
TTCTATATTATCTTTTTTTAATTAGATATTTT

Query= MSMg01no325_a15.g1 MSMg01no325_a15.g1 CHROMAT_FILE:
MSMg01no325_a15.g1 PHD_FILE: MSMg01no325_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:30 2005
         (655 letters)



>mm_chr3_45840629_45841683
          Length = 1055

 Score = 1164 bits (602), Expect = 0.0
 Identities = 641/657 (97%), Gaps = 5/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   cctagttcaaagctgaaaccttcagaaaagaaaaatgaattaagtttataggtattccaa 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctagttcagagctgaaaccttcagaaaagaaaaatgaattaagtttataggtattccaa 263

                                                                       
Query: 64  ggttaaatgggctgaacttatgctccaaaatttactgtcatgtctgagaagttttaaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggttaaatgggctgaacttatgctccaaaatttactgtcatgtctgagaagttttaaagg 323

                                                                       
Query: 124 tacttcaggaaattggatttttatgcttccatttcagtgctcaaaaataaaacatttaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacttcaggaaattggatttttatgcttccatttcagtgctcaaaaataaaacatttaaa 383

                                                                       
Query: 184 atatataacaaaataaaatattttgacttctgtcataaacagaattaagagttagcagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatataacaaaataaaatattttgacttctgtcataaacagaattaagagttagcagta 443

                                                                       
Query: 244 tggccaaatttgaaattcttatacatatgaatgcatagaatcatagtacaacaatattag 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 444 tggccaaatttgaaattcttatacatatgaatgcatagaagcatagtacaacaatattaa 503

                                                                       
Query: 304 ttatttttctcagtgtttattttaattaattttatggtgctttgggttttctgatttcta 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ttatttttctcagtgtttattttaattaattttatggtgctttaggttttctgatttcta 563

                                                                       
Query: 364 catgtaagcttttaatgttttatagcactatttaaaaatcattttctctgattcttttgt 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 catgtaagcttttaatgttttatagcactatttaaaaatcattttctctgtttcttttgt 623

                                                                       
Query: 424 tgataacattgatagtgtctgggctaactatggaaaatgaggttgaatactg-----tat 478
           |||||||| ||||||||| ||||||||||||| |||||||||||||||||||     |||
Sbjct: 624 tgataacaatgatagtgtatgggctaactatgaaaaatgaggttgaatactggattttat 683

                                                                       
Query: 479 gacgaattccttttccctatgtgttagctttcatttgtgttgtaattgctctcagtgaac 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gacgaattccttttccctatgtgttagctttcatttgtgttgtaattgctctcagtgaac 743

                                                                       
Query: 539 aagtgtgtcccatagcaacagattctttgctaaaaaatattatgtgataataaagcatag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aagtgtgtcccatagcaacagattctttgctaaaaaatattatgtgataataaagcatag 803

                                                                    
Query: 599 tanaacgactggttttgtgtttctgtctcatgttctatattatctttttttaattag 655
           || || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 804 taaaatgactggttttgtgtttctgtttcatgttctatattatctttttttaattag 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)