Query= MSMg01no326_c02.b1 MSMg01no326_c02.b1 CHROMAT_FILE:
MSMg01no326_c02.b1 PHD_FILE: MSMg01no326_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:47 2005
(662 letters)
>mm_chr3_39843068_39844130
Length = 1063
Score = 1259 bits (651), Expect = 0.0
Identities = 657/659 (99%), Gaps = 1/659 (0%)
Strand = Plus / Minus
Query: 5 gaattcactgctac-catttcagtgtgcagtaatgacttttcactatgagtttttgtgtg 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gaattcactgctacacatttcagtgtgcagtaatgacttttcactatgagtttttgtgtg 804
Query: 64 tcacttttatctgaggtctctgcctgtattgagtcaattttattatcgttaatgggactc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcacttttatctgaggtctctgcctgtattgagtcaattttattatcgttaatgggactc 744
Query: 124 tcaatcttttggcagcatctagcagcctcagggagggcggccaaccagcaatgagagcaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcaatcttttggcagcatctagcagcctcagggagggcggccaaccagcaatgagagcaa 684
Query: 184 aggcagaaacaggagttggtggggagggttgagggaaaggagaccagaagttcagccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aggcagaaacaggagttggtggggagggttgagggaaaggagaccagaagttcagccaaa 624
Query: 244 cagccagccagagggactaggccagctccaagaggtcatgcatcagtcagccaacatttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cagccagccagagggactaggccagctccaagaggtcatgcatcagtcagccaacatttg 564
Query: 304 ataaacaagtgaactcagctactgagcctcagtcagcttcgcattgtggagttccatctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ataaacaagtgaactcagctactgagcctcagtcagcttcgcattgtggagttccatctt 504
Query: 364 gggagggaggggacctgactattccttaagctctggagggccttccaacaaattcactgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gggagggaggggacctgactattccttaagctctggagggccttccaacaaattcactgt 444
Query: 424 gttctgaagccaagttctgaagaacattacccaggggaccaaaagaaatgatgttgtttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gttctgaagccaagttctgaagaacattacccaggggaccaaaagaaatgatgttgtttt 384
Query: 484 catcagtattgggaggacagaaagaaaaaagttcaaagattattccatctttgccaagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 catcagtattgggaggacagaaagaaaaaagttcaaagattattccatctttgccaagaa 324
Query: 544 tccagatcaataatggtgcattggactctaagtctcatggaactggacgtatatttactg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccagatcaataatggtgcattggactctaagtctcatggaactggacgtatatttactg 264
Query: 604 gactgtttctttactgttgtgtttctttatttctatttatctgttttacatttatttca 662
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 gactgtttctttactgttgtgtttctttatttctatttatctgttttaaatttatttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_c02.g1 MSMg01no326_c02.g1 CHROMAT_FILE:
MSMg01no326_c02.g1 PHD_FILE: MSMg01no326_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:47 2005
(623 letters)
>mm_chr3_39679499_39680518
Length = 1020
Score = 1085 bits (561), Expect = 0.0
Identities = 607/623 (97%), Gaps = 3/623 (0%)
Strand = Plus / Plus
Query: 1 actggatacatagaataactgacacaatgtgggaaacagcagacattcagtggcttcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggatacatagaataactgacacaatgtgggaaacagcagacattcagtggcttcttt 260
Query: 61 gcttctgtgacaagctgtgaatagtagactgtgaacaaattgagacctatatgaaatacc 120
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttctgtgaccagctgtgaacagtagactgtgaacaaattgagacctatatgaaatacc 320
Query: 121 gtgtgcaggagaaagaagccaggaaaacaaaataataatatttcactgaatttattcaca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgcgggagaaagaagccaggaaaacaaaataataatatttcactgaatttattcaca 380
Query: 181 agctagcctaacactatctgagtctcttagcttccataattaggagagagaagcattaga 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 agctagcctaacactatctgagtctcttagcttccataattaggagaaagaagcattaga 440
Query: 241 atatgtggtagggtagatccaggagctctgaaacaaaattctaggaggagtgtcagccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatgtggtagggtagatccaggagctctgaaacaaaattctaggaggagtgtcagccat 500
Query: 301 caagtatcagtatgcttagcaagacagagtattctagcaaggcacgtcctgcagccaccc 360
||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 501 caaatatcagtatgcttagcaagacagagtattctagcaaggaaagtcctgcagtcaccc 560
Query: 361 aagacactattcaaggaaagctctaaacaaatttagaagaatcctttaaaagatgattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagacactattcaaggaaagctctaaacaaatttagaagaatcctttaaaagatgattat 620
Query: 421 aaatgagtccacagagaaaataatttgtggaaggttctgctttaccacacacatgtgcca 480
| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 621 ga-tgagtccacagagaaaataatttgtggaaagttctgctttaccacacac--gtgcca 677
Query: 481 gccatatcaactaccggagaaaataggcaactcacacaagtgagctggtgggctctggca 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 678 gccatatcaactaccggagaaaataggcaactcacacaagtgaactggtgggctctggca 737
Query: 541 gtgtttgcctgcatggttgttaactcatttttcctgtatctgcacagcgagccttgacaa 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 738 gtgtttgcctgcatggttgttaactcatttttcctgtatctgcacaacgagccttgacaa 797
Query: 601 tacagatgctgttgcataacctt 623
|||||||| ||||||||||||||
Sbjct: 798 tacagatggtgttgcataacctt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1020
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1010
Effective search space: 619130
Effective search space used: 619130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
