BAC Information

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BAC

Clone NameMSMg01-327D02
Chromosome3 (Build37)
Map Location 99,874,079 - 99,874,326
singlet/doubletsinglet
Overlap geneSpag17
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps, LOC623045
Downstream geneWdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D02.T7 (MSMg01no327_d02.b1)MSMg01-327D02.TJ (MSMg01no327_d02.g1)
ACCAG444615AG444616
length771764
length of high quality
(start - end)
---254 (74 - 327)
definitionCHROMAT_FILE: MSMg01no327_d02.b1 PHD_FILE: MSMg01no327_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:03 2005CHROMAT_FILE: MSMg01no327_d02.g1 PHD_FILE: MSMg01no327_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTTGCGGCGCCAANGANNNNNANATTTCGGACCCCGNNGAANNNNN
NNNGAGTAGCGNGCACCNGAGAGANGNANNNGAAAAAANGNNNAGNAACG
NNAAANNAAAGGGAAACCCCCCGCAAAAGAACCAAGAGAGACCACCACAC
ACCAGGCACACCGGCAAAGACGAAAACACCAGGCGACCGCACACGCCGGC
GAGGCCGCGAGGAAAGAGGACCACCCCCCCACGGNCGGCGGGAGAGCCTT
TTTTTACAACCACTCTGGCCACCACTCTGGCGCCTCCCCATAAAACCGCA
CACACCACCCCCAATTTTTTCTTCTTTTACCCCCCCCGGGCCGACCCCAC
AACACGACCATTGCGCGCCCCCCCCCCCCCCGCGCCAAAAGGAGAAAAGA
ACCCCGCCCCCCCCCCCCCCCCCACCCGGACAGAGCCCACACGCCCCCAC
ACCCCGAACCCCGCCCACCCGAAAACGCCGCCCCCCCACCCCCCGCCGGC
AACCCACCCCGACCCCCGCCAAGACCCCCACCCCCCCCCCCCCCCCGCAA
GCCCCCGGGCCACCGCCCCCCCAGCGCGCGCACCCCCCCCCCACCCCCCC
CCCCACCGCCCCGCCCACCCCCGCCCAACGCCAACGCGGCCCCCACCCCC
CCCGCCCCCCGCGGCCGCGCCCCCCCTTTTTTTTTCCCCTTTGCCCTTTC
CCCCTTTCTTTTCGCACTCATCCGGCGCCCCCCTTTCCCCTCCCTCCCGA
CCCTTACCCCCTCCCCCTCCG
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGAATTCCGCAGAAAATAACAAAAAAAAAATGCC
AGTACAGTTTTGTTATTTGGAAGTGTCTCTGACGTAATAAGTGAAGGATG
TAGTCAGCACTAGCCAAGGCCCAAGTAGAGGCAGGGACACAAGGAAGTCA
AGCTTGAATTGAACACAGCTTGGCCCTGTGAAGTGGCCTTCTCAAACTGG
GGTGGCATGGGACTAAGGAAAGAACAAAGATTCAGAACTCACTCACGATG
GTTCAAGGAGTTAAATATGAGACACCCCCATAAGCTTGAGACTGTGAAGA
ACTGTTCTCAGAAAGTGTGAACTAATCACAAAACAAATGCATGCTTTCTG
CTGCCATATAGCCCCAGAGCTACCCCACAACAGGTCAGTGTTCAATCTGG
GGCTGACGAGAGGAAGCAAAAATATCTGTGGTATGTGATCACTAGCAGCA
AGCATGTGAGTCTTCCGGTGAGAATGACGATTGCTTATGTGACATTCCGA
ATACCCTTCTGAATATTAATTTGATAATGTGGTTAATATCAGATCCATGA
TATTTTTCTTCCTGAATCATATTGTTTTCTAAGAAAAGAATCTATATTTG
TATTGATCCAATAGCTTTCGATGTTTTTTGTTTTTTTAATTAATATTGAT
CCGTGATATAATTCTTATAGTCACCAGGGTTCTACCATTTTTCATGGGTG
TTACCTTTAAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d02.g1 MSMg01no327_d02.g1 CHROMAT_FILE:
MSMg01no327_d02.g1 PHD_FILE: MSMg01no327_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:03 2005
         (254 letters)



>mm_chr3_99873877_99874526
          Length = 650

 Score =  464 bits (240), Expect = e-135
 Identities = 248/252 (98%), Gaps = 4/252 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cagaaaataacaaaaaaaaaatgccagtacagttttgttatttggaagtgtctctgacgt 62
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cagaaaataac---aaaaaaatgccagtacagttttgttatttggaagtgtctctgacgt 394

                                                                       
Query: 63  aataagtgaaggatgtagtcagcactagccaaggcccaagtagaggcagggacacaagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aataagtgaaggatgtagtcagcactagccaaggcccaagtagaggcagggacacaagga 334

                                                                       
Query: 123 agtcaagcttgaattgaacacagcttggccctgtgaagtggccttctcaaactggggtgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtcaagcttgaattgaacacagcttggccctgtgaagtggccttctcaaactggggtgg 274

                                                                       
Query: 183 catgggactaaggaaagaacaaagattcagaactcactcacgatggttcaaggagttaaa 242
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 273 catgggactaaggaaagaacaaa-attcagaactcactcacgatggttcaaggagttaaa 215

                       
Query: 243 tatgagacaccc 254
           ||||||||||||
Sbjct: 214 tatgagacaccc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 650
Length adjustment: 9
Effective length of query: 245
Effective length of database: 641
Effective search space:   157045
Effective search space used:   157045
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)