BAC Information

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BAC

Clone NameMSMg01-327D09
Chromosome3 (Build37)
Map Location 153,784,370 - 153,950,589
singlet/doubletdoublet
Overlap geneSlc44a5, LOC100040980
Upstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm
Downstream geneLhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D09.T7 (MSMg01no327_d09.b1)MSMg01-327D09.TJ (MSMg01no327_d09.g1)
ACCAG444629AG444630
length728763
length of high quality
(start - end)
345 (72 - 416)286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no327_d09.b1 PHD_FILE: MSMg01no327_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:04 2005CHROMAT_FILE: MSMg01no327_d09.g1 PHD_FILE: MSMg01no327_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,950,246 - 153,950,589)(153,784,370 - 153,784,655)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCAGGTACCGCGGAA
TTCAAGTGACTTTCCCTCAGCCTGAAGCCTCCACAGCACCTCCGTTCTCC
CTCCGAGAGAAGAGTTTCCCACTTCTTTATGTACTTCACATTGACTTTGG
CATCTGTCAGCAGTAACCATTCTTGACATCTTGGCCTGTTCTAGAAAGCC
CTCCTACAGCATTTCAGCAGGCACTACCCCCTGGTAGTGGAATCAGATAG
CATGTGCTCTCTGGACAGCTCTGGTGTGATTTCCCAAGATAGCTTTATGG
GAAACAGCTGGCTCCTGCCTGCACCATCCACAGATAAACAGTATTATCAA
AACATAAGCAGGCTGCTTCTCTCTCTGCAGAAAGAAAAGAAGATACCAGA
AAGCAAATGAAAGTCCACACACCCTCACCTTTTCTCTGTTTTCTTGCATT
TAATCAACCCAGTTTCTAAAGAGAAAGCTGGCTGTTAATCAGGTAAACCA
CTAACTTATTATTTTTGTTTGTTTCGAGATGGTGTCTCATAATTTAGCTG
AGTGCCTTGGAACTCTCTATGAAGAGCAAGCCGGTCTGGAACTTGAAGAG
ATCTTGCTTCTGTCTTCTGAGTACTAGGATCCAAGCCGGACATGCCCCGG
CCCAATCCACACCATAACAGTCTCATCAAATGTATATATGAACGTCTAAG
CTGTATATTAACAATTACAAACGTATTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAAATATTTCTGTATTTGACAAACCTCT
GTAAGGTTTCCTGGCACACATATGCCTCGGTGAAGAGGAAACAGGCATCT
GAAAAATGATTAAGTTAATAAATTAACAGGTCCAAACATACTACAACGAA
TCACACTTGACCTTGCTTCTGTCATTGTTCAACGACAGCCTTCTATAGGA
AAAAATAAACAAGATCATGGACTATGAAATAAAGACTGTTTGGAATATTG
GGTATTTTTGACAACTCTATAAGTTTATGTTAAATTCCAGAAGGTCAAGT
GAGTCGTGGGCCAATACCGATGCCAGATGAAGGGAACGTATTGAAGTTCC
CTTCTGATGCAAGACCACATCCCCCCAGGTTGAGCTTACGAGGATAACTA
TTTCAGGAGATGTGGTGCAAGGTTGATTCCCATGTTGTATTTGTGTTTTG
TACCTACCTTGTCCTTCCTGTTCCCATCCCTGCACTGCCCTTCTTTCCTT
TTTCCCACCTTTCCATTTTCTCTTATTTTTCCTCACAAATTTCTATCTCT
CATTTCCCCCTTACTATTCTATCTTTGTGCCTCTTCTTTCCCCACCCTTT
CTTTCCTACTTTCCCCTTATTATTTTATATCTCTATCTCCCTATATTCCC
CCTCCTTTTCCCTTTCCCTTATTTTTTTTTTCTTCCCGCCCCTTCTCCCT
TTCTTTCTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d09.b1 MSMg01no327_d09.b1 CHROMAT_FILE:
MSMg01no327_d09.b1 PHD_FILE: MSMg01no327_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
         (345 letters)



>mm_chr3_153950046_153950790
          Length = 745

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaagcctccacagcacctccgttctccctccgagagaagagtttcccacttctttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctgaagcctccacagcacctccgttctccctccgagagaagagtttcccacttctttatg 485

                                                                       
Query: 61  tacttcacattgactttggcatctgtcagcagtaaccattcttgacatcttggcctgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tacttcacattgactttggcatctgtcagcagtaaccattcttgacatcttggcctgttc 425

                                                                       
Query: 121 tagaaagccctcctacagcatttcagcaggcactaccccctggtagtggaatcagatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tagaaagccctcctacagcatttcagcaggcactaccccctggtagtggaatcagatagc 365

                                                                       
Query: 181 atgtgctctctggacagctctggtgtgatttcccaagatagctttatgggaaacagctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atgtgctctctggacagctctggtgtgatttcccaagatagctttatgggaaacagctgg 305

                                                                       
Query: 241 ctcctgcctgcaccatccacagataaacagtattatcaaaacataagcaggctgcttctc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 304 ctcctgcttgcaccatccacagataaacagtattatcaaaacataagcaggctgcttttc 245

                                                       
Query: 301 tctctgcagaaagaaaagaagataccagaaagcaaatgaaagtc 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctctgcagaaagaaaagaagataccagaaagcaaatgaaagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_d09.g1 MSMg01no327_d09.g1 CHROMAT_FILE:
MSMg01no327_d09.g1 PHD_FILE: MSMg01no327_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
         (286 letters)



>mm_chr3_153784170_153784855
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaatatttctgtatttgacaaacctctgtaaggtttcctggcacacatatgcctcgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cataaatatttctgtatttgacaaacctctgtaaggtttcctggcacacacatgcctcgg 260

                                                                       
Query: 61  tgaagaggaaacaggcatctgaaaaatgattaagttaataaattaacaggtccaaacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagaggaaacaggcatctgaaaaatgattaagttaataaattaacaggtccaaacata 320

                                                                       
Query: 121 ctacaacgaatcacacttgaccttgcttctgtcattgttcaacgacagccttctatagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaacgaatcacacttgaccttgcttctgtcattgttcaacgacagccttctatagga 380

                                                                       
Query: 181 aaaaataaacaagatcatggactatgaaataaagactgtttggaatattgggtatttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaataaacaagatcatggactatgaaataaagactgtttggaatattgggtatttttg 440

                                                         
Query: 241 acaactctataagtttatgttaaattccagaaggtcaagtgagtcg 286
           |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acaactctataagtttatgttaaattccagaagggcaagtgagtcg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)