BAC Information

Click to search

BAC

Clone NameMSMg01-327H06
Chromosome3 (Build37)
Map Location 119,575,872 - 119,576,145
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327H06.T7 (MSMg01no327_h06.b1)MSMg01-327H06.TJ (MSMg01no327_h06.g1)
ACCAG444807AG444808
length798761
length of high quality
(start - end)
278 (45 - 322)343 (71 - 413)
definitionCHROMAT_FILE: MSMg01no327_h06.b1 PHD_FILE: MSMg01no327_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:21 2005CHROMAT_FILE: MSMg01no327_h06.g1 PHD_FILE: MSMg01no327_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGCTCTGTACTCCCTGATCCCTTTGGGATCTCTTCCTCTCCTTC
CATCCCTTCCTCCCTTCCTCCCTCTCTCTTTCCTTCTTTCACTTGCTCTT
GCTCTCTCCAAGCTACCACGAGGAACAAAAAGAAGAGATTTTGCTCTTCT
ACACACTGTCCTTCCCATGAGCCCCAATGGAACCAACTGACCATAGACTA
AACCCTTGAAATTGTAAGTCATAACAACCTTTGCTCTTTGTGATGGTTTG
TATATCCTTGATCAGGGAGTATCACTATTATGAAGTCTGTCCGTGTTGGA
GTAGGTGTTTCACAGTGGGTGTGGGCTTTAATACCCTTGTCCTAGCTGCC
TGGAAGTTAGACTTCTCCCCCCCCCCCCCANATGATGATATATAACTCTC
AGCTCCTCCTGCACCATGTCTGTCTGTACGCTGCCATGTTTCCACCTTGA
TGATATGCACTGAACGAAGCTCCGATCCTGTATATCTGTTTTAACTAAAT
GTCTTATGATCGCTTTGGTTAATGCGTTCTTTATTTATTATAACCCTCAT
TACACTCTTCTCTGAAATTATCCCCTGTTTTTGATTTACCATATATACTG
TCCAACTTAACTCCACTTCTAATTATATTAGTTTTCCTTCATTCCCTTTA
TGCCTTGTCCCATGGATCCCTCTGATGTTTTCTATATTTATCTCCTTCCT
ACTCCTTATCCTATCTATCTTATTTATATATTACTACTTATATCATTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAGAGCTAATAAACACCTTCAATAAAGTG
GCTAGATGAAAATTTAACTCAAAGAAATCAGTAGCTCTCCTCTCCTCTAC
ATAAGTAATTAACAGGCTGAGAAAGAAGTTAGAAGACAGTACCCTTCAAA
ATAGCCTCAAATAATATAAAATACCTTGGTGTAACTCTAAACAAGCAAGT
GAAAAACCTGCATGATAAGAACTTCAAGACTCTGAAGAAGGAAATTGAGG
AAGATATCAGATGGAAAGACCTCCTATGCTCATGGATTAGTAGGATTTAC
ATAGCAAAAATAACCATCTCATCAAAAGCAACCTACAGATTCAATGCAAT
TCCCATAAAAATTCCAACACAACTCTCCAGAGATCTTGAAAGAACAGTTC
TCAACTTCATATGAAACAAACAGACAAAACAGAATAGCTAAAATGATCCT
GAACAATAGAGAACTTCTGAGCTTATCAGTATCCTTGACCTCAAGCTACA
CTACATAATAATAATAAAACTGCATGGTGTTGATATAGAAATAGGCAGGT
GGATCAATGGGATTGAATCATAGACACGAAAATAAACCCTCAAACCTATG
GACACTTGATTTTTGACCAAGACGGCAAAACCATACAATGGAAAATATAA
GGAAGTCTCTTCAACTAAGGCGCTGGTCTTACTGGATGTCTGCATGATAA
AGAATGCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_h06.b1 MSMg01no327_h06.b1 CHROMAT_FILE:
MSMg01no327_h06.b1 PHD_FILE: MSMg01no327_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:21 2005
         (278 letters)



>mm_chr3_119575613_119576290
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 272/274 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgctctgtactccctgatccctttgggatctcttcctctccttccatccct 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggaattctgtgctctggagtccctgatccctttgggatctcttcctctccttccatccct 474

                                                                       
Query: 64  tcctcccttcctccctctctctttccttctttcacttgctcttgctctctccaagctacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcctcccttcctccctctctctttccttctttcacttgctcttgctctctccaagctacc 414

                                                                       
Query: 124 acgaggaacaaaaagaagagattttgctcttctacacactgtccttcccatgagccccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 acgaggaacaaaaagaagagattttgctcttctacacactgtccttcccatgagccccaa 354

                                                                       
Query: 184 tggaaccaactgaccatagactaaacccttgaaattgtaagtcataacaacctttgctct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tggaaccaactgaccatagactaaacccttgaaattgtaagtcataacaacctttgctct 294

                                             
Query: 244 ttgtgatggtttgtatatccttgatcagggagta 277
           ||||||||||||||||||||||||||||||||||
Sbjct: 293 ttgtgatggtttgtatatccttgatcagggagta 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)