TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCAAAATACGCGG
AATTCATTTGACTTATTACGCTCAAGGAAACACAGTATCTTTTTGATATA
TTTTAAGTGTTCCGATGAAAATAATCTTTAACTTCTAGGTCTGTGCAATA
TAAGGCATTGGATGGGAAACTTTAAAAAAATGAAATGTAACGAATATATT
AAATAAAAAAGATAATTATCAAGTCAAGAAACAATTTGAAAGATATTATT
TTTTATGACAGATGATTACTTTAAAGAAAGCAGTATTCCTTTGTGTCATG
AAAATGAGCTGATGTCTACAACAAGCTAGTTTTCCTCTGGCCTGTGGACC
CATTTCCTCTGATACAGAATTAAAGAGCTCTCATTGTATTATTGCAACTG
GTGTGCTTTTTGTTTTTTAATTGCTCCTACCTACTCATAACACTGAACTT
AACACCACGAGTGTGGGTCCTTCTAATCATAATACTGCTGACTATTGCAT
CACCTATATAACATAATCTCAATTATATAAATACAAGTATACAGTTTTTT
TTTATTTTTCAGCCACACTAAAGCAATAGCTTACAGTCTCCAGGGATAGC
ATCTTTTTTCTCTTAATGACATTTCCAACATGTTCACATCATTAGTTGAG
TTTGATGGGAGTGCTCATGTCATTCCACAAAATTAGATGTGAGCAGCTTC
TAAGAAGTCCTTTAGGCTATTGTTATCTCCATATAAGTTGTTTCCCTATC
TCATGAAC

GAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGAGCCCC
ATTTTTAATGGAGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTT
TATATATATTGGATATTAGTCCCTATCTGATTTAGGATAGGTAAAGGTCC
TTTCCCAATCTGTTGGTTGCCTTTTTGTCTCATTGACGGTATCTTTTGCC
TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTATTGATTCTCAATCT
TACAGCACAAGCCATCGCTGTTCTAATCAGGAATTTTTCCCCTGTGCCCA
TATCTTTGAGGCTTTTTCCCACTTTCTCCTCTATACGTGAGAAAGGGAAA
TTTGCAAATTCATCTGGAATAACAAAAACCCACCACAGCAAAAACTCTTC
TCAATGATAAAATAAACTCTGGTGGAATCACCATGCCTGACCTAAAGCTG
TAATACGGAGCCATTGTGATAAAAACTGCATGGTACTGGTATTGCAACAG
ACTAGTAGACCATTGGAATAGAATTGAAGACCCAGATATGAACCCACATA
CCTATGGTCACTTGATCTTTGACAAGGGAGCTTAAACCATCCACTGGAAT
AAAGACAGTATTTCCAACAAATGGTGGTGGCACATCTGGAGAGTATCATG
TAAAAGAATGCGAAATGATCCCTTCCTATCTCCTTGTACTAAGGCCTAAT
CTTATTGGA

Query= MSMg01no328_c07.b1 MSMg01no328_c07.b1 CHROMAT_FILE:
MSMg01no328_c07.b1 PHD_FILE: MSMg01no328_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:12 2005
         (710 letters)



>mm_chr3_24176188_24177291
          Length = 1104

 Score = 1282 bits (663), Expect = 0.0
 Identities = 695/709 (98%), Gaps = 6/709 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcatttgacttattacgctcaaggaaacacagtatctttttgatatattttaagtg 61
           |||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 gaattcatttgatttaagatgctcaaggaaacacagtatctttttgatatattttaagtg 845

                                                                       
Query: 62  ttccgatgaaaataatctttaacttctaggtctgtgcaatataaggcattggatgggaaa 121
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ttctgatgaaaataatctttaacttctaggtctgtgcaatataaggcattggatgggaaa 785

                                                                       
Query: 122 ctttaaaaaaatgaaatgtaacgaatatattaaataaaaaagataattatcaagtcaaga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ctttaaaaaaatgaaatgtaacgaatatattaaataaaaaagataattatcaagtcaaga 725

                                                                       
Query: 182 aacaatttgaaagatattattttttatgacagatgattactttaaagaaagcagtattcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aacaatttgaaagatattattttttatgacagatgattactttaaagaaagcagtattcc 665

                                                                       
Query: 242 tttgtgtcatgaaaatgagctgatgtctacaacaagctagttttcctctggcctgtggac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttgtgtcatgaaaatgagctgatgtctacaacaagctagttttcctctggcctgtggac 605

                                                                       
Query: 302 ccatttcctctgatacagaattaaagagctctcattgtattattgcaactggtgtgcttt 361
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caatttcctctgatacagaattaaagagctctcattgtattattgcaactggtgtgcttt 545

                                                                       
Query: 362 ttgttttttaattgctcctacctactcataacactgaacttaacaccacgagtgtgggtc 421
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttgttttttaattgcttctagctactcataacactgaacttaacaccacgagtgtgggtc 485

                                                                       
Query: 422 cttctaatcataatactgctgactattgcatcacctatataacataatctcaattatata 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttctaatcataatactgctgactattgcatcacctatataacataatctcaattatata 425

                                                                       
Query: 482 aatacaagtatacagtttttttttatttttcagccacactaaagcaatagcttacagtct 541
           |||||||||||||||||||      |||||||||||||||||||||||||||||||||||
Sbjct: 424 aatacaagtatacagtttt------tttttcagccacactaaagcaatagcttacagtct 371

                                                                       
Query: 542 ccagggatagcatcttttttctcttaatgacatttccaacatgttcacatcattagttga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccagggatagcatcttttttctcttaatgacatttccaacatgttcacatcattagttga 311

                                                                       
Query: 602 gtttgatgggagtgctcatgtcattccacaaaattagatgtgagcagcttctaagaagtc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtttgatgggagtgctcatgtcattccacaaaattagatgtgagcagcttctaagaagtc 251

                                                            
Query: 662 ctttaggctattgttatctccatataagttgtttccctatctcatgaac 710
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctttaggctattgttatctccatataagttgtttccctatctcatgaac 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1104
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1094
Effective search space:   765800
Effective search space used:   765800
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)