BAC Information

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BAC

Clone NameMSMg01-328D18
Chromosome3 (Build37)
Map Location 121,221,760 - 121,379,255
singlet/doubletdoublet
Overlap geneSlc44a3, A730020M07Rik, 4930432M17Rik
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328D18.T7 (MSMg01no328_d18.b1)MSMg01-328D18.TJ (MSMg01no328_d18.g1)
ACCAG445386AG445387
length731739
length of high quality
(start - end)		245 (77 - 321)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no328_d18.b1 PHD_FILE: MSMg01no328_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:20 2005CHROMAT_FILE: MSMg01no328_d18.g1 PHD_FILE: MSMg01no328_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,379,012 - 121,379,255)(121,221,760 - 121,222,101)
sequence
NATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTCGGCGG
AATTCATGGGAATTACAAAAAGATGAATGCCTAGAGCTGAGCCTGACCTC
AAATGCTAAAGTGGACCTCTGACCTGTATTGGAGGCACTGGTTCTGGGAT
CAACACGAATGTATGTGTGAATATATCTAGTCTTTAATTTGTTCATGGAT
TTCCTTGTAAATTCTAATCTAGAGGTTCTTTTGGCAGCAGGCAGGGGGTT
ATCCTCCAGAGAGAATTCCTCAAATGTGGGTTTAAGCCAATAGAAAGTCT
TTATTAGTCCACTGACAATATTACTCGTTGTTGGGGAATCTCAGTATAGC
ACTCTCAGTTGAGTCTCTCTTACCATGAGTTTTTAGGCACAAAAACCATG
TTCTTGGTTAACATGCTCCCCCCATTTGTAATAGTTAGTTAAACAGATGC
GGAACTACAGAAGCTAAAAAACCAGGTCTCATACGTTTAGAGACTTTCCC
AGAACTATGCACACACTGATGAATTCAGTCTTTGTTGTCATTTTGGTAGG
TAATGCTGTCTGTGTGCTGAGTGCTATGGCCTGCCTGTTACTTCCATTAT
GTAGTCAGTTGTTTAAAGTTCTGGATATCCTGTTACCCCATTCAGTTTTC
CGCCATTCATCTTTTTTTTTTTGTTCTACCGAAGACTGGTACTGCTCATA
ATATTGTATTAATCTCTCCTATATATATCTC

CCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAAGGTAGCTGGCCATACGCTT
TGGGAATTCTGACTCTACTTCCCATCTCCCCACAGAAGCCCTGGGATTAT
AGATGGATGTTCTTCTGCATCCAGCTGTACATGAGTTCTTAAGAGTCAAG
CTCATCTTTATGTTTATGCAGCCAGCCTTTATCCACTGAGCCAGTGCTCA
GCCCTGTTCATGTGTCTTCTATGGCTGCGTCTACACTCACTCAATAGGTT
GAACAAACATAGACAACTCAAAGGCAGAAGAATTTATTTGAATCATGACC
TCAGGGGTCTCAGTCCACATTTGCATGCTCCCATATTCTTGAGACTATCA
GAGTGTTTGTGGTAGAGCGGACCCCCCACCGTGTATTCGACAGGAAGTGG
TGGGAGAAAGGAAGCAGGGAGCAGAAGGCAGGAAGGGGCCAGAGACAAGA
GACCCTGCAAGCTTCCACTTTCTAGCAACCTACTTCCTTTTAGCGAGGTC
CCCTCTCTGGAAGTCTCCTTAGCCTCTAACGGCTCCTCACACATAACCTT
CCCCTGAGTCCATGAGTTATGGATCACCCGTTGTTATGAATCCTTATAAG
GATATTACCTACACCTTTATCGTCTTCTCGGTCTTTCGTCATCATGTTTC
CTCATTTCCCCCCTTTGCTCTTCGGTGATTGTGTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_d18.b1 MSMg01no328_d18.b1 CHROMAT_FILE:
MSMg01no328_d18.b1 PHD_FILE: MSMg01no328_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:20 2005
         (245 letters)



>mm_chr3_121378887_121379531
          Length = 645

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcctagagctgagcctgacctcaaatgctaaagtggacctctgacctgtattggaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 atgcctagagctgagcctgacctcaaatgctaaagtggacctctgagctgtattggaggc 310

                                                                       
Query: 61  actggttctgggatcaacacgaatgtatgtgtgaatatatctagtctttaatttgttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 actggttctgggatcaacacgaatgtatgtgtgaatatatctagtctttaatttgttcat 250

                                                                       
Query: 121 ggatttccttgtaaattctaatctagaggttcttttggcagcaggcagggggttatcctc 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 249 ggatttccttgtaaattctaatctagaggtccttttggcagcaggcagggggttatccac 190

                                                                       
Query: 181 cagagagaattcctcaaatgtgggtttaagccaatagaaagtctttattagtccactgac 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cagagagaattcctcaaatatgggtttaagccaatagaaagtctttattagtccactgac 130

               
Query: 241 aata 244
           ||||
Sbjct: 129 aata 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no328_d18.g1 MSMg01no328_d18.g1 CHROMAT_FILE:
MSMg01no328_d18.g1 PHD_FILE: MSMg01no328_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:20 2005
         (347 letters)



>mm_chr3_121221560_121222306
          Length = 747

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaaggtagctggccatacgctttgggaattctgactctacttcccatctccccacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaaggtagctggccatacgctttgggaattctgactctacttcccatctccccacaga 260

                                                                       
Query: 61  agccctgggattatagatggatgttcttctgcatccagctgtacatgagttcttaagagt 120
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccctgggattacagatgggtgttcttctgcatccagctgtacatgagttcttaagagt 320

                                                                       
Query: 121 caagctcatctttatgtttatgcagccagcctttatccactgagccagtgctcagccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagctcatctttatgtttatgcagccagcctttatccactgagccagtgctcagccctg 380

                                                                       
Query: 181 ttcatgtgtcttctatggctgcgtctacactcactcaataggttgaacaaacatagacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatgtgtcttctatggctgcgtctacactcactcaataggttgaacaaacatagacaa 440

                                                                       
Query: 241 ctcaaaggcagaagaatttatttgaatcatgacctcaggggtctcagtccacatttgcat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ctcaaaggcagaagaatttatttgaatcatgacctcaggggtctcagtccacatttgctt 500

                                                     
Query: 301 gctcccatattcttgagactatcagagtgtttgtggtagagc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcccatattcttgagactatcagagtgtttgtggtagagc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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