BAC Information

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BAC

Clone NameMSMg01-328G03
Chromosome3 (Build37)
Map Location 14,625,591 - 14,625,935
singlet/doubletsinglet
Overlap genenone
Upstream gene0710005M24Rik, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik
Downstream geneLOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328G03.T7 (MSMg01no328_g03.b1)MSMg01-328G03.TJ (MSMg01no328_g03.g1)
ACCAG445494AG445495
length755748
length of high quality
(start - end)
687 (44 - 730)345 (74 - 418)
definitionCHROMAT_FILE: MSMg01no328_g03.b1 PHD_FILE: MSMg01no328_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:31 2005CHROMAT_FILE: MSMg01no328_g03.g1 PHD_FILE: MSMg01no328_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANAAATCCGCGGA
ATTCAAGGCCCATACCCAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAACCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTC
AATGGCCTTTCTCCACACAAACACCAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTG
ACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA
CGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTA
TGATA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGACATGTACATCTTTAAAGTACTAG
CTACAATTGTGAAAGTAAAAAGAGAACTGAACTTATTCTTAATGGTTTGT
GTTATTTAATCCAATAGATCCAAAATATTATAACTCTAATATGAATCCAT
ATTTTCAAACCATTGGCTGTGTCTGCCCTCAGCTCAACTCTGACCTTCCC
ACATGTTAGTGGCTCTGTGATAATAGAGATTTGAGAATTTTTCTCCAGAG
TAAGCACTGTGCTGAGCTTTCTTCAGTATAAGGGCATTGCATAAAAAATG
AACAGCCCTTCCTGGTTGCAGAATGCTGCCTTCATACTTTCCTCTTGTAA
CCAGAGGTTTTAGGATCAAACCATGGACCTTCACATCCCAGCAAGACAGA
TGCAACTCCTCATCTTCAATATACCAATCAAAGAGACAAGTAGTAATGAA
AGCAGAGAAAGGACCTTTACTAGGTGTCCAATGGCCTACACATCTGTCTT
CAATATACTGGCATATGGTGTAGGTTTAACTATCACAGAGATTATAATGC
ATTAGCAATTAAGTTTGAGTTACCATTAACCCATTGGCTTCTCATTATGG
ATAGAAGAAAAATGCACTTCTCCTTGTAGCCATTTAAGTCCAGTTCCGAA
TTCTCTACCTCATGTTCTCTGTGTCTTTCAACCCTTAGCTGGAATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_g03.g1 MSMg01no328_g03.g1 CHROMAT_FILE:
MSMg01no328_g03.g1 PHD_FILE: MSMg01no328_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:31 2005
         (345 letters)



>mm_chr3_14625262_14626006
          Length = 745

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacatgtacatctttaaagtactagctacaattgtgaaagtaaaaagagaactgaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aagacatgtacatctttaaagtactagctacaattgtgaaagtaaaaagagaactgaact 615

                                                                       
Query: 61  tattcttaatggtttgtgttatttaatccaatagatccaaaatattataactctaatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tattcttaatggtttgtgttatttaatccaatagatccaaaatattataactctaatatg 555

                                                                       
Query: 121 aatccatattttcaaaccattggctgtgtctgccctcagctcaactctgaccttcccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aatccatattttcaaaccattggctgtgtctgccctcagctcaactctgaccttcccaca 495

                                                                       
Query: 181 tgttagtggctctgtgataatagagatttgagaatttttctccagagtaagcactgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgttagtggctctgtgataatagagatttgagaatttttctccagagtaagcactgtgct 435

                                                                       
Query: 241 gagctttcttcagtataagggcattgcataaaaaatgaacagcccttcctggttgcagaa 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagctttcttcagtagaagggcattgcataaaaaatgaacagcccttcctggttgcagaa 375

                                                        
Query: 301 tgctgccttcatactttcctcttgtaaccagaggttttaggatca 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgctgccttcatactttcctcttgtaaccagaggttttaggatca 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)