BAC Information

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BAC

Clone NameMSMg01-329D04
Chromosome3 (Build37)
Map Location 76,577,612 - 76,577,902
singlet/doubletsinglet
Overlap genenone
Upstream geneGolph4, Fstl5
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329D04.T7 (MSMg01no329_d04.b1)MSMg01-329D04.TJ (MSMg01no329_d04.g1)
ACCAG446094AG446095
length721816
length of high quality
(start - end)
297 (9 - 305)223 (74 - 296)
definitionCHROMAT_FILE: MSMg01no329_d04.b1 PHD_FILE: MSMg01no329_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:34 2005CHROMAT_FILE: MSMg01no329_d04.g1 PHD_FILE: MSMg01no329_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAGAGAATCCGCGGAATTCCCATGATAGGCCGCATTTGCAGTTCATTTT
TCTTTCAAAGAGTGAACTGATCCTAAATAGTAGATAATAGTACTCATCTG
TGGCCTGGCTGTCATGGCATACTACCTCCCTTTCAGTATCTATCTGCACC
TTCTCCAGGCACTTCACAGTTATGAGGAGGATCACCTGAGAGGGCTTTTA
TTGTCTCTGTGAGCTAAGAATCAGGCATAACAGCTGAAAGACAAAGGACA
TCCACATGAGCACTGCCACTATTGTTGAATGAAAAGCCACTTCATGTGCT
TTAGGAAAAAAAATCAAGCTCTTACATTTCAAAAGCTTCAGCATTCACAA
ACACACGCTTGTGGAATGTCCTTTGAAACACCCACACCGACTCATCCTTA
TTTTGGAGAATTTCAGCTTCTCTGGTCTGGATATTGTCACATGTTCTAAT
AGGAAAATCATATAGCCCAGATCGTCATGGATCATTGAACCCTACTTTGC
TATATGTCTGTGTGTCTTACCTTTGTGTCTGCGATAATTATAGTTCACCA
CCCTTTGATGTTATGGATGAACCGTGTTAAAGCATCATCAATTTCTCTCC
GTGTTTTGCTTCCCCCCCTCACCGTTTTTTTTTATTTTTCCCTACCACCC
CTTTTCGTACGAACTGACACGTCACCTGACCTCCGACCTTATTTTCCCCG
GTTATTAATCCTGCTTAGTTA
CGATGACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTT
AATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATA
TGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAATGATCCTTTCC
CAATCTGTTGGTGGTCTGCAACCCTATAGGTGGAACAACATTATGAACTA
ACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGG
CCTAGTCGGCCATCACTGCACTGAACGGCCCATTGTATACGTATACTTTA
CATGCCCCATTACATTGTTAATGTCTTGGCCACAAATGGTTATGTTTTTT
TTTTTTCTTCCCTTCCCCCCCCCTCTTTTTTCCCTTTTCTTCTTTTTCTC
TTCTCTCTTTTTTTTCATATATTTTTTTTTCTTCTAGTTCATTCCCAGTT
TTTTTACCTTTTTTCAACTTCCCAACTCCCCCCCCTTTTTCCTTCCATCC
TTTTTTCTTATCCCCATTATTCTCTACCTTTTTTATATATTTATCTCCTT
TAATATAACACCAGCCCATCTTTTTTTTTTAGCCCTCTATTTTTTTTCCT
CCGTTTGTTCTTTTTGTTCCTTTCTTTCCTTATTATTTTTCGTCCTGTTT
TTGTTCTTTTGTTTTCTCCCTTTTTCCTTTCATTTAGTCATTCATTAGAC
ACTTGTTTTCCTCTTTTTTACTTTCTTCTACTTTCCTACTATTTACCTTT
ACCCACGTTTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_d04.b1 MSMg01no329_d04.b1 CHROMAT_FILE:
MSMg01no329_d04.b1 PHD_FILE: MSMg01no329_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:34 2005
         (297 letters)



>mm_chr3_76577406_76578102
          Length = 697

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcccatgataggccgcatttgcagttcatttttctttcaaagagtgaactgatcct 66
           |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaattcccatgaaaggaagcatttgcagttcatttttctttcaaagagtgaactgatcct 438

                                                                       
Query: 67  aaatagtagataatagtactcatctgtggcctggctgtcatggcatactacctccctttc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatagtagataatagtactcatctgtggcctggctgtcatggcatactacctccctttc 378

                                                                       
Query: 127 agtatctatctgcaccttctccaggcacttcacagttatgaggaggatcacctgagaggg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtatctatctgcaccttctccaggcacttcacagttatgaggaggatcacctgagaggg 318

                                                                       
Query: 187 cttttattgtctctgtgagctaagaatcaggcataacagctgaaagacaaaggacatcca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttttattgtctctgtgagctaagaatcaggcataacagctgaaagacaaaggacatcca 258

                                                              
Query: 247 catgagcactgccactattgttgaatgaaaagccacttcatgtgctttagg 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gatgagcactgccactattgttgaatgaaaagccacttcatgtgctttagg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)