BAC Information

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BAC

Clone NameMSMg01-329D05
Chromosome3 (Build37)
Map Location 96,401,951 - 96,402,220
singlet/doubletsinglet
Overlap geneAnkrd34
Upstream geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl
Downstream gene6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9, Olfr1402, Chd1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329D05.T7 (MSMg01no329_d05.b1)MSMg01-329D05.TJ (MSMg01no329_d05.g1)
ACCAG446096AG446097
length814772
length of high quality
(start - end)
202 (71 - 272)270 (79 - 348)
definitionCHROMAT_FILE: MSMg01no329_d05.b1 PHD_FILE: MSMg01no329_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:34 2005CHROMAT_FILE: MSMg01no329_d05.g1 PHD_FILE: MSMg01no329_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGCTGCCATTCCTGAGAACCCCACGGTGACCAGACTACGGCCGGG
TGACCAACAGGACCCAGAGAAGGAGCCCATGTGCGCTTTAGGATCCGGAT
GTAGCGGTAGTGGGTTAATCCGCTCTAATTGCCCGGTGGCGGCAGCGCGA
GTTCCTCGCTAGACGCCCCCAAATAAAGGGCGCTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCTCTACTCTCTAATATTTTGACCAT
CTTGCTTCCCCCATCTGTACGTTTTTTTTTTGCCCCTTTTTTTTTTTTTT
CCCTATATCTCTTTTTTTTTGTCTTTCTCCCATTCCATCTCCCCACTGTT
TCCTACTTTTTTGCTCTTTTCCCCCCCCCCCCTCCACATCTATACTCCAT
CACTCGCTTATTTTTTTTTCCTTATCCCTTCCATACCTTCTTTTTCTCTC
CATTCCCCCTTATTCCTTTTATCTCTCTTCCCTTCTCCTTTTCTCTATTC
TTTTCTTCTTTTCTCCTCCCCTTCTTTCTTTTTATCTCTCCCCCTTTATT
CTTTTCTCTCTTTTTTTTTTTCTTTCTTCCCTCCCCTAATTGATTTTTCT
TTCTATCTCTCTTTTTCCTTACCTTTCCCTTCTTTTTCCTTTTTCTCTCT
TCCCCCTTCTCCTCCCCTTTTCTTTCCCCCTTTCTTTTATTTTTCTTCTT
TTCCCCCCTTCCCCTCTTTCCTTTACCCCCTTCTCACCCCTTTCCCCCCC
CTCTCCTTTCCTTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGCCAGACGCTCCAAACCG
GGCCTCCCTTCTGCAGGAGGGACCGGTTGAGGAGGAGCCACAAGGCCCCA
GGGCTCGGAATTGAGCCTTTTGAGTGGTTTTGGAGGATGTCGAGGTGGCT
TGGGGAGAGGCTCGGAAGGGGAAGGGTCATCAGGGGGCTTGGGAAGAGGA
AATTCAAAAATGTCTCTTTTCTCCTCTTCTTCCTGGGTGCGAGGGGATAA
CAACCCGCGCCCTCCTCCTGCATTCTGCAGTTGGACTTCTGAAGGCGATG
TGCAGACCCCTGTACTATGAGGAGCGGGTGCAGGGTCCTCTACCCCTGGG
GACGGTGTGGATTTCTCCCCCTGCCTGGTCTTCTTGGTGCCTGAGGTTGA
TGTATCCGCGGTTATGACGATGACTCCTGTGCCCTTTGTCCTTGCATCCG
CCCATTTCCGTTGCTTGTGTTTTCCGTGTTCCCTCTTATTTCTTTCCCCC
CTTTCGTTATTTTTGTTTTCGCTCCTCTTTCCGTTTCCCCCTTTTCCCTT
TTTTCTCATATTCAATATTCGTTTTTTGTTTCCCTTTTCCGCGCTGTCTG
TTACTAATTCTCCATCCCCCCTCTTTTTTCTTTTCCCCTCCTTTTCTCCC
CTGTTTTTCCCTCGTTTTCCCCCCCTTTTTTCTCCTACCTTTTTCCCCTT
TTTTTCCTTTTTCTTTTATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_d05.g1 MSMg01no329_d05.g1 CHROMAT_FILE:
MSMg01no329_d05.g1 PHD_FILE: MSMg01no329_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:34 2005
         (270 letters)



>mm_chr3_96401751_96402420
          Length = 670

 Score =  499 bits (258), Expect = e-146
 Identities = 267/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagccagacgctccaaaccgggcctcccttctgcaggagggaccggttgaggaggagc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 470 agcagccagacgctccaaaccgggcctcccttctgcaggaggaaccggttgaggaggagc 411

                                                                       
Query: 61  cacaaggccccagggctcggaattgagccttttgagtggttttggaggatgtcgaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cacaaggccccagggctcggaattgagccttttgagtggttttggaggatgtcgaggtgg 351

                                                                       
Query: 121 cttggggagaggctcggaaggggaagggtcatcagggggcttgggaagaggaaattcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cttggggagaggctcggaaggggaagggtcatcagggggcttgggaagaggaaattcaaa 291

                                                                       
Query: 181 aatgtctcttttctcctcttcttcctgggtgcgaggggataacaacccgcgccctcctcc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 290 aatgtctcttttctcctcttcttcctgggcgcgaggggataacaacccgcgccctcctcc 231

                                         
Query: 241 tgcattctgcagttggacttctgaaggcga 270
           |||| |||||||||||||||||||||||||
Sbjct: 230 tgcagtctgcagttggacttctgaaggcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)