MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-329M03
Chromosome	3 (Build37)
Map Location	59,230,600 - 59,231,277
singlet/doublet	singlet
Overlap gene	EG666756
Upstream gene	Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
Downstream gene	EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tsc22d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D3Ucla1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28146 MGI:92638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229317 MGI:1098684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810407C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69227 MGI:1916477
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932431H17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666680 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins pseudo : _no_value

name	LOC100040251 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins

name	Siah2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040293 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Clrn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC100040416 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins

name	Gpr171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229323 MGI:2442043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140795 MGI:2155705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gpr87 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:84111 MGI:1934133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74191 MGI:1921441
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70839 MGI:1918089
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Igsf10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242050 MGI:1923481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 71 ESTs, 1 Protein

name	EG666751 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666751 MGI:3648018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	EG666756 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666756 MGI:3648019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 224 ESTs, 4 Proteins pseudo : _no_value

name	EG229330 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229330 MGI:3644725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	EG435732 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:435732 MGI:3644280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	LOC433597 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins

name	LOC433598 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1082 ESTs, 7 Proteins pseudo : _no_value

name	LOC100040407 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	LOC669780 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	EG666803 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666803 MGI:3643798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins

name	C130079G13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229333 MGI:3028051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC676914 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:676914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Aadacl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639634 MGI:3646333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins

name	Aadac (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67758 MGI:1915008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sucnr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:84112 MGI:1934135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669823 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669823
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100040485 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040485
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	Tsc22d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487000 GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TSC22 domain family 2 transcript_id : NM_001081229.1

name	D3Ucla1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801749 GeneID:28146 MGI:92638
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 3, University of California at Los Angeles 1 transcript_id : NM_030685.2

name	Eif2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54020675 GeneID:229317 MGI:1098684
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 2a transcript_id : NM_001005509.1

name	2810407C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:143770877 GeneID:69227 MGI:1916477
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810407C02 gene transcript_id : NM_001040396.2

name	4932431H17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486918 GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932431H17 gene transcript_id : NM_001081262.1

name	LOC100040251 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251165 GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins product : similar to U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 2 transcript_id : XM_001474354.1

name	Siah2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130495 GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seven in absentia 2 transcript_id : NM_009174.3

name	LOC100040293 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251167 GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to LOC569648 protein transcript_id : XM_001474446.1

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533243 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153386.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533238 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153385.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533239 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153384.2

name	LOC100040416 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251176 GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins product : similar to ribosomal protein L13 transcript_id : XM_001474690.1

name	Gpr171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802624 GeneID:229323 MGI:2442043
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 171 transcript_id : NM_173398.2

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676311 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_001008497.1

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676314 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_133200.3

name	Gpr87 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14161701 GeneID:84111 MGI:1934133
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 87 transcript_id : NM_032399.1

name	P2ry13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803469 GeneID:74191 MGI:1921441
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled 13 transcript_id : NM_028808.2

name	P2ry12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980658 GeneID:70839 MGI:1918089
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled 12 transcript_id : NM_027571.2

name	Igsf10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369577 GeneID:242050 MGI:1923481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 71 ESTs, 1 Protein product : immunoglobulin superfamily, member 10, transcript variant 2 transcript_id : XM_887155.2

name	EG666751 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369578 GeneID:666751 MGI:3648018
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666751 transcript_id : XM_985780.1

name	EG229330 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251171 GeneID:229330 MGI:3644725
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG229330 transcript_id : XM_143256.6

name	EG435732 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251173 GeneID:435732 MGI:3644280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG435732 transcript_id : XM_888144.3

name	LOC433597 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94369583 GeneID:433597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to arylacetamide deacetylase-like 2 transcript_id : XM_485244.3

name	LOC669780 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251178 GeneID:669780
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : similar to arylacetamide deacetylase-like 2 transcript_id : XM_001474651.1

name	EG666803 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251180 GeneID:666803 MGI:3643798
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins product : predicted gene, EG666803 transcript_id : XM_986080.2

name	C130079G13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375785 GeneID:229333 MGI:3028051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C130079G13 gene transcript_id : NM_177661.3

name	LOC676914 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251182 GeneID:676914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : hypothetical LOC676914 transcript_id : XM_001474701.1

name	Aadacl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369586 GeneID:639634 MGI:3646333
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins product : arylacetamide deacetylase-like 2 transcript_id : XM_986184.1

name	Aadac (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13184049 GeneID:67758 MGI:1915008
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arylacetamide deacetylase (esterase) transcript_id : NM_023383.1

name	Sucnr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14161703 GeneID:84112 MGI:1934135
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : succinate receptor 1 transcript_id : NM_032400.1

name	LOC100040485 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251184 GeneID:100040485
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : hypothetical protein LOC100040485 transcript_id : XM_001474780.1

name	Tsc22d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487001 GeneID:72033 MGI:1919283
definition	GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : TSC22 domain family 2 protein_id : NP_001074698.1

name	D3Ucla1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507609 GeneID:28146 MGI:92638
definition	codon_start : 1 note : ribosome associated membrane protein 4 product : stress-associated endoplasmic reticulum protein 1 protein_id : NP_109610.1

name	Eif2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54020676 CCDS:CCDS17367.1 GeneID:229317 MGI:1098684
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence ISS] GO_function : GO:0043022 - ribosome binding [Evidence ISS]; GO:0003743 - translation initiation factor activity [Evidence IEA] [Evidence ISS]; GO:0000049 - tRNA binding [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA]; GO:0006417 - regulation of protein biosynthesis [Evidence ISS]; GO:0042255 - ribosome assembly [Evidence ISS] codon_start : 1 product : eukaryotic translation initiation factor 2A protein_id : NP_001005509.1

name	2810407C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:143770878 GeneID:69227 MGI:1916477
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008430 - selenium binding [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0001514 - selenocysteine incorporation [Evidence ISS] codon_start : 1 product : selenoprotein T protein_id : NP_001035486.2 transl_except : (pos:58389160..58389162,aa:Sec)

name	4932431H17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486919 GeneID:545527 MGI:3588212
definition	codon_start : 1 product : hypothetical protein LOC545527 protein_id : NP_001074731.1

name	LOC100040251 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251166 GeneID:100040251
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474404.1

name	Siah2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254613 CCDS:CCDS17368.1 GeneID:20439 MGI:108062
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : seven in absentia 2 protein_id : NP_033200.2

name	LOC100040293 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251168 GeneID:100040293
definition	codon_start : 1 product : similar to LOC569648 protein protein_id : XP_001474496.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415402 CCDS:CCDS17369.1 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 3 protein_id : NP_700435.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415398 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 2 protein_id : NP_700434.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510293 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 1 protein_id : NP_700433.1

name	LOC100040416 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251177 GeneID:100040416
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474740.1

name	Gpr171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734176 CCDS:CCDS17370.1 GeneID:229323 MGI:2442043
definition	GO_function : GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 171 protein_id : NP_775574.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56676312 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_001008497.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469033 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_573463.1

name	Gpr87 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14161702 GeneID:84111 MGI:1934133
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 87 protein_id : NP_115775.1

name	P2ry13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229197 CCDS:CCDS17372.1 GeneID:74191 MGI:1921441
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : G protein-coupled receptor 68; G protein-coupled receptor 86; Vpurinergic receptor P2Y, G-protein coupled 13 product : purinergic receptor P2Y13 protein_id : NP_083084.1

name	P2ry12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980659 CCDS:CCDS17373.1 GeneID:70839 MGI:1918089
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IC]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001609 - adenosine receptor activity, G-protein coupled [Evidence IMP]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001621 - platelet ADP receptor activity [Evidence IMP]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007188 - G-protein signaling, coupled to cAMP nucleotide second messenger [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : purinergic receptor P2Y12 protein_id : NP_081847.2

name	Igsf10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82889532 GeneID:242050 MGI:1923481
definition	codon_start : 1 product : immunoglobulin superfamily, member 10 isoform 2 protein_id : XP_892248.1

name	EG666751 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369579 GeneID:666751 MGI:3648018
definition	codon_start : 1 product : hypothetical protein protein_id : XP_990874.1

name	EG229330 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251172 GeneID:229330 MGI:3644725
definition	codon_start : 1 product : hypothetical protein protein_id : XP_143256.5

name	EG435732 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251174 GeneID:435732 MGI:3644280
definition	codon_start : 1 product : hypothetical protein protein_id : XP_893237.3

name	LOC433597 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:51708106 GeneID:433597
definition	codon_start : 1 product : similar to arylacetamide deacetylase-like 2 protein_id : XP_485244.1

name	LOC669780 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251179 GeneID:669780
definition	codon_start : 1 product : similar to arylacetamide deacetylase-like 2 protein_id : XP_001474701.1

name	EG666803 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251181 GeneID:666803 MGI:3643798
definition	codon_start : 1 product : similar to arylacetamide deacetylase-like 2 protein_id : XP_991174.2

name	C130079G13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244080 GeneID:229333 MGI:3028051
definition	codon_start : 1 product : hypothetical protein LOC229333 protein_id : NP_808329.1

name	LOC676914 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251183 GeneID:676914
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474751.1

name	Aadacl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94369587 GeneID:639634 MGI:3646333
definition	codon_start : 1 product : similar to arylacetamide deacetylase-like 2 protein_id : XP_991278.1

name	Aadac (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13184050 CCDS:CCDS17375.1 GeneID:67758 MGI:1915008
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence ISS] [Evidence IEA] GO_function : GO:0019213 - deacetylase activity [Evidence ISS]; GO:0016298 - lipase activity [Evidence TAS] [Evidence ISS] codon_start : 1 product : arylacetamide deacetylase (esterase) protein_id : NP_075872.1

name	Sucnr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14161704 GeneID:84112 MGI:1934135
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation note : G protein-coupled receptor 91 product : succinate receptor 1 protein_id : NP_115776.1

name	LOC100040485 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251185 GeneID:100040485
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474830.1

name	LOC669823 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669823
definition	number : 3 pseudo : _no_value

name	LOC669823 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669823
definition	number : 2 pseudo : _no_value

name	LOC669823 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669823
definition	number : 1 pseudo : _no_value

name	LOC666680 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251169 GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins product : similar to Spermine synthase pseudo : _no_value transcript_id : XR_031838.1

name	EG666756 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149251170 GeneID:666756 MGI:3648019
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 224 ESTs, 4 Proteins product : predicted gene, EG666756 pseudo : _no_value transcript_id : XR_031813.1

name	LOC433598 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251187 GeneID:433598
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 1082 ESTs, 7 Proteins product : similar to HSPC008 pseudo : _no_value transcript_id : XR_031993.1

name	LOC100040407 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251175 GeneID:100040407
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : hypothetical protein LOC100040407 pseudo : _no_value transcript_id : XR_031847.1

clone name	MSMg01-415G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-540F13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-066M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329M03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-457L14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-329N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237G17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-237O11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-274C21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392G10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-388D08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-158D06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-537K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-545P09
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-063C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520N19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-416J18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-364M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452F21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-335F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422B20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-064I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455L03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-104N03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-137G19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-355N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-410J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468O17
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-156C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041E15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084N13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-329M03.T7 (MSMg01no329_m03.b1)	MSMg01-329M03.TJ (MSMg01no329_m03.g1)
ACC	AG446498	AG446499
length	729	733
length of high quality (start - end)	683 (47 - 729)	88 (70 - 157)
definition	CHROMAT_FILE: MSMg01no329_m03.b1 PHD_FILE: MSMg01no329_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:20 2005	CHROMAT_FILE: MSMg01no329_m03.g1 PHD_FILE: MSMg01no329_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:20 2005
singlet/doublet	singlet	---
BLAST hit	plural	no hit data
sequence	NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCCTTAACAGATACCATCATATTTCTTTCTCAAAGTGTAAACAGAG AAATAAATACATCTCCCAAGAACAGAAGAAAGGCAAATATCCCTCAGGAG TGACCACTGTACACTACGTTACAGTCTCTTACCTTTTACACTTTATGACA TGCTCTGGGCACAGAATTCTGAGCATCTTCCTGTTCCTGCCCATACTTGG TAGCTTAACATTTAGATTGCATCCTGATCTTTATTTCTGGTACCTTCTTT CTCACCTTACTTGCCTTGAAAATATAGCTACAGAAATTATTGATCAACAT TTGTGACATATTGACCACCTAAGAATAAACCTTTGGTTGAACATTGAAGT GTAAAACTTTCATTCCTAATTTTATAATTTTGTCCACTTTCTGCCTCTAC TTGGTTACATATGTTTCTCTGAACTTTGAAAATTCTCACAAACATTAATT TTTCACTAAAATATTTTATTTTTCTCTAATGTGTTTCTTCATGGTTATAT TTTATCTGTTTATGTCTAACATGATGGATGGCAATTTATACATTTATATA TAATAGCAATATGTTTTGCTATCTAGAAGGAACACTGACATTGCTGCCTG TGAAGCATTTTCCTTTGCTCTCCTATCTAATTCTTTTAAGTTGATTATGA CTTTATTCCATCCACAGNTTACATTTTAA	NGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXTGAAAGACTTCTCTCACATACGCACATACGG TCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCT CCTCTCCTCTCCTCTCCATCTCATCTCACTCATCTCCATCTTCTTCCAAC TCTTTTAAAGCAAAAGTGATGTTACGAAACTAAGCAAAACAAAAGAACTG GCATTTAATTGGCATGGGAAAAGTGGACAAGGGATGCTGTATCAATGATA CAAAATAGAAATGATACAATGATAGAAAATGAAAATGATATCTGTTTATA AACAGAGGAGAATTCTGTTATGAATCCAATTGGGCAATTTAGCTAATGTT TCCCTGAGGCATAATGAGACTCAAAAAAAATTTTTTTCTTAAATATACTT TTTTTTTTTAATGTTAAAATCTCTGGAATAATTTTGTTGGTTGGTTTGTT GCATGAGTATATGGATCTGTGAGCTACATGCTAAACAATGATCTTCAGTT ACACCAAACCTTATTAAACTTTCCAGATATACAAATAAGAAATCAGTCTC AATAAACATTCATCTTGTATACATAAAATGAATTGCTATAAATGTCTAGT CATTTATCTTCAAAACTAAGAAAAAGTACATTTTATATTTAATTCTTTTT ATCATTTCTAAAATTTAAATTCATCATATCAGG
quality values	Open. Hide. 0 3 10 8 9 11 12 16 25 37 36 29 28 28 22 22 32 37 37 32 31 41 37 37 41 47 33 33 33 33 36 36 39 39 30 32 30 30 30 43 43 42 42 20 26 26 42 41 57 68 47 47 47 47 68 51 68 59 57 47 47 48 48 48 48 54 54 54 51 50 47 47 47 50 57 57 57 57 57 57 57 57 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 68 68 68 50 50 50 50 57 50 50 50 57 57 57 68 68 68 68 68 68 68 68 59 59 59 59 59 59 57 68 68 50 50 50 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 68 68 68 68 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 68 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 57 57 59 59 57 57 57 57 57 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 50 53 53 53 53 53 57 59 59 57 57 57 57 57 57 59 59 59 50 50 50 50 47 47 44 59 39 39 39 39 39 39 47 47 50 39 44 41 47 47 53 59 57 57 57 57 57 57 59 59 57 50 50 50 50 53 50 50 50 50 47 47 44 44 44 39 41 44 59 59 59 59 59 59 59 59 59 59 59 59 44 39 39 39 36 39 41 41 41 46 46 47 47 47 47 41 41 37 34 30 39 39 39 25 30 20 20 23 34 34 50 57 59 48 48 48 59 59 59 48 48 48 50 48 50 50 47 47 44 39 39 39 39 39 37 37 37 39 37 37 39 39 39 41 42 50 59 50 48 48 48 57 48 48 48 59 47 59 46 41 41 41 41 41 37 44 43 59 39 34 37 39 39 39 47 46 47 47 47 47 41 37 37 35 28 31 39 31 41 41 37 41 37 37 37 37 41 41 47 47 43 41 31 31 39 36 36 35 36 31 35 41 41 35 37 44 44 41 41 41 37 41 43 43 43 31 31 26 31 39 41 41 39 39 36 34 34 34 41 37 37 28 24 24 24 25 24 25 27 25 29 29 32 37 37 36 32 29 29 37 41 32 31 36 28 32 28 34 24 24 18 23 3 0 3 15 18 20 19 32 32 39 39 31 31	Open. Hide. 0 3 11 11 8 10 13 9 9 15 16 30 23 22 18 30 23 34 34 37 50 50 50 50 50 50 50 50 47 41 28 21 11 8 8 8 14 12 22 24 33 33 29 48 44 48 35 32 19 29 16 32 32 50 50 50 42 41 39 27 21 11 11 10 19 30 43 59 47 37 37 44 53 53 57 57 57 57 50 50 57 53 53 53 50 53 57 57 53 59 59 68 68 68 68 68 68 68 68 68 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 54 54 57 34 34 13 13 12 34 34 25 25 28 44 44 35 35 35 44 44 27 27 27 41 41 23 23 27 41 34 23 23 21 38 38 13 13 15 27 27 11 11 12 21 15 14 8 10 8 8 8 12 14 12 10 11 11 11 12 8 10 10 10 10 9 12 19 16 10 13 20 16 21 15 17 15 21 12 12 12 24 26 27 20 20 38 28 44 28 38 32 24 19 17 17 17 19 25 10 10 10 15 10 11 11 12 27 24 11 11 16 24 15 11 11 24 28 18 12 12 26 32 59 32 43 27 32 24 38 12 12 12 27 27 38 38 20 20 15 27 12 14 15 32 27 42 44 35 32 27 24 11 11 24 27 44 42 42 44 42 37 37 44 28 23 23 23 24 30 20 20 20 41 34 57 43 43 43 43 43 43 43 43 28 28 28 32 32 28 24 24 32 32 18 17 17 30 30 32 35 32 28 22 12 12 18 28 25 37 37 44 43 57 48 48 48 48 37 37 25 20 20 23 20 23 23 28 33 30 30 17 17 17 26 26 15 13 12 11 11 15 19 23 19 19 11 12 12 19 21 28 34 32 28 35 35 40 43 48 48 47 43 39 39 30 36 30 35 37 43 40 54 43 43 39 42 42 47 43 43 40 35 35 35 39 28 32 28 34 23 31 30 32 32 22 28 28 29 11 10 9 9 14 24 41 41 39 47 39 35 35 35 39 39 47 41 37 16 9 9 9 9 14 18 37 35 35 35 34 34 30 30 30 34 34 31 30 24 32 24 28 18 18 20 32 32 59 47 47 47 43 43 43 43 39 39 39 35 35 35 32 34 28 28 20 32 25 28 28 14 14 28 18 16 16 15 12 12 19 15 28 28 32 22 20 34 23 28 25 29 20 15 18 12 11 11 22 23 14 14 21 24 15 13 6 6 6 11 10 28 18 23 15 10 10 10 23 23 39 39 40 28 28 14 12 12 12 20 24 34 28 30 30 39 30 31 37 28 24 28 31 37 37 32 23 25 28 28 28 34 31 17 17 13 21 15 22 26 34 35 22 22 25 15 13 9 9 10 10 19 16 21 21 21 21 21 19 24 16 16 14 17 14 23 12 11 11 19 13 16 16 28 28 26 16 11 11 17 19 14 9 9 10 15 19 28 20 11 12 9 9 15 17 36 36 28 32 29 22 22 20 26 12 12 12 14 18 30 14 14 15 17 17 20 23 20 20 20 23 23 28 19 23 16 16 14 17 11 11 11 17 17 14 19 9 9 10 11 11 23 23 16 16 11 11 11 19 18 29 33 28 28 23 23 23 28 21 12 12 11 11 11 19 25 34 32 28 28 16 18 11 11 15 16 13 9 9 8 12 10 10 10 10 11 11 12 11 11 11 12 22 17

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no329_m03.b1 MSMg01no329_m03.b1 CHROMAT_FILE:
MSMg01no329_m03.b1 PHD_FILE: MSMg01no329_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:20 2005
         (683 letters)



>mm_chr3_59230396_59231477
          Length = 1082

 Score = 1207 bits (624), Expect = 0.0
 Identities = 665/679 (97%), Gaps = 1/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaacagataccatcatatttctttctcaaagtgtaaacagagaaataaatac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaacagataccatcatatttctttctcaaagtgtaaacagagaaataaatac 264

                                                                       
Query: 65  atctcccaagaacagaagaaaggcaaatatccctcaggagtgaccactgtacactacgtt 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 atctcccaagaacagaagaaaggcaa-tatccctcaggagtgaccactgtacactacgtt 323

                                                                       
Query: 125 acagtctcttaccttttacactttatgacatgctctgggcacagaattctgagcatcttc 184
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 acagtctcttaccgcttacactttatgacatgctctgggcacagaattctgagcagcttc 383

                                                                       
Query: 185 ctgttcctgcccatacttggtagcttaacatttagattgcatcctgatctttatttctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgttcctgcccatacttggtagcttaacatttagattgcatcctgatctttatttctgg 443

                                                                       
Query: 245 taccttctttctcaccttacttgccttgaaaatatagctacagaaattattgatcaacat 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taccctctttctcaccttacttgccttgaaaatatagctacagaaattattgatcaacat 503

                                                                       
Query: 305 ttgtgacatattgaccacctaagaataaacctttggttgaacattgaagtgtaaaacttt 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct: 504 ttgtgacatattgaccacttaagaataaacctttggttgaacattgaagtgtagatcttt 563

                                                                       
Query: 365 cattcctaattttataattttgtccactttctgcctctacttggttacatatgtttctct 424
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 564 cattcctaattttataattttgtacactttctgcctctacttgtttacatatgtttctct 623

                                                                       
Query: 425 gaactttgaaaattctcacaaacattaatttttcactaaaatattttatttttctctaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaactttgaaaattctcacaaacattaatttttcactaaaatattttatttttctctaat 683

                                                                       
Query: 485 gtgtttcttcatggttatattttatctgtttatgtctaacatgatggatggcaatttata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtgtttcttcatggttatattttatctgtttatgtctaacatgatggatggcaatttata 743

                                                                       
Query: 545 catttatatataatagcaatatgttttgctatctagaaggaacactgacattgctgcctg 604
           ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct: 744 catttatatataatagcaatatgttttgctatctaaaaggaacactgacactgctgcccg 803

                                                                       
Query: 605 tgaagcattttcctttgctctcctatctaattcttttaagttgattatgactttattcca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgaagcattttcctttgctctcctatctaattcttttaagttgattatgactttattcca 863

                              
Query: 665 tccacagnttacattttaa 683
           ||||||| |||||||||||
Sbjct: 864 tccacagtttacattttaa 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information