Query= MSMg01no330_a12.b1 MSMg01no330_a12.b1 CHROMAT_FILE:
MSMg01no330_a12.b1 PHD_FILE: MSMg01no330_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:40 2005
(344 letters)
>mm_chr3_14704298_14705041
Length = 744
Score = 543 bits (281), Expect = e-159
Identities = 329/345 (95%), Gaps = 2/345 (0%)
Strand = Plus / Plus
Query: 1 ataccattttattttatgtgtatacttcctgatgagcaaagttgatgaaacagtgaacta 60
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 201 ataccattttattttatgtgtatacatcctgatgagcaaagttgatgcaacagtgaacta 260
Query: 61 ttacaggaatacaagcttctataaaagcccatggtgtcacttaagatctctgctgcag-t 119
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ttacaggaagacaagcttctataaaagcccatggtgtcacttaagatctctgctgcaggt 320
Query: 120 cataagtgcagttggttatttcatatatcatttctctttacaggaatcaaaacctaaaga 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 321 g-taagtgcagttggttatttcatatatcatttctctttacaggaatcaaaatctaaata 379
Query: 180 ggagaatatggcaagtgcagactggggacacgatagtgaaaatggtaagagtatttcttc 239
|||||||||||||||| ||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 380 ggagaatatggcaagtacagactggggataaggtagcgaaaatggtaagagtatttcttt 439
Query: 240 tacatctatcaaaatagtagtttgttctcttttctagtagaggatgtattaatcagttaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacatctatcaaaatagtagtttgttctcttttctagtagaggatgtattaatcagttaa 499
Query: 300 cattactatacattcacaggttaatggtaagagtaatttttgaat 344
||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 500 cattactgtacattcacaggttaatggtaagagtcatttttgaat 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_a12.g1 MSMg01no330_a12.g1 CHROMAT_FILE:
MSMg01no330_a12.g1 PHD_FILE: MSMg01no330_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:41 2005
(649 letters)
>mm_chr3_14703971_14705019
Length = 1049
Score = 1093 bits (565), Expect = 0.0
Identities = 628/649 (96%)
Strand = Plus / Plus
Query: 1 atctataaaatgtatcattatgaataccattgtcttatggataattaattactagttcta 60
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 201 atctataaaatgtatcattatgaatagcattgtcttatggataattaatcactagttcta 260
Query: 61 ttacctgattctaaattaacatcatgatagtcattcagttctgtccataaccatgccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacctgattctaaattaacatcatgatagtcattcagttctgtccataaccatgccaat 320
Query: 121 ttatttcatattaaattagtgttgctaacacagcttagtacttttattcaaagaaatttg 180
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttatttcatattaaattagtattgctaacacagcttagtacttttattcagagaaatttg 380
Query: 181 ataagatttagtcaatagtcagtcacatcttccacaagcataggaaaacaagaccagttt 240
|||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||
Sbjct: 381 ataagatttagtcaatagtcagacatatcttccacaagcttaggagaacaagaccagttt 440
Query: 241 aataatatctatgattttgatatttcatttttattttacaataacataatacaattcatg 300
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 441 aataatatctatgattttgatatttcatttttatattacaataacataaaacaattcatg 500
Query: 301 ctgacctaccccaatagacattttacaataccattttattttatgtgtatacttcctgat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 ctgacctaccccaatagacattttacaataccattttattttatgtgtatacatcctgat 560
Query: 361 gagcaaagttgatgaaacagtgaactattacaggaagacaagcttctataaaagcccatg 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaaagttgatgcaacagtgaactattacaggaagacaagcttctataaaagcccatg 620
Query: 421 gtgtcacttaagatctctgctgcaggtgtaagtgcagttagtcatttcacatatcatttc 480
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct: 621 gtgtcacttaagatctctgctgcaggtgtaagtgcagttggttatttcatatatcatttc 680
Query: 481 tctttacaggaatcacaacctaaataggagaaaatggcaagtgcagactggggatatgga 540
||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||| ||
Sbjct: 681 tctttacaggaatcaaaatctaaataggagaatatggcaagtacagactggggataaggt 740
Query: 541 agcgaaaatggtaagagtatttcttttacatctatcaaaatagtagtttgttctcttttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcgaaaatggtaagagtatttcttttacatctatcaaaatagtagtttgttctcttttc 800
Query: 601 tagtagaggatgtattaatcagttaacattactgtacattcacaggtta 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtagaggatgtattaatcagttaacattactgtacattcacaggtta 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
