BAC Information

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BAC

Clone NameMSMg01-330G20
Chromosome3 (Build37)
Map Location 4,725,947 - 4,726,228
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G20.T7 (MSMg01no330_g20.b1)MSMg01-330G20.TJ (MSMg01no330_g20.g1)
ACCAG446988AG446989
length812753
length of high quality
(start - end)
322 (99 - 420)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no330_g20.b1 PHD_FILE: MSMg01no330_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:08 2005CHROMAT_FILE: MSMg01no330_g20.g1 PHD_FILE: MSMg01no330_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTCTTTTTTTCTCCTTATTCCCCCCNCCTTTCCAGGCNNNNNNG
CCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTAGAGGCCCCGAACATCCCAGGGATTTACGGGGCCCCGA
CCAATTTACCCAATGAGATAAATGTGTGGCCCCCTCTCGACAGACCTGAT
TGGGACTACAACATGGCTCAAGGTAGGGAGAGGTTGACAGTTTACCACGG
GGCTCTGGTGGCAGATCTCAAGGGAGCAGCAAGATGCCCCACCAATTTGG
CAAAGGTAAGAGAAGTAATTCAGAGTTCAACCGAGCCCGCATCTGTTTTC
TTAGAGAGGTTAATGGAGGCTTACAGATGCTACATTCCCTTTGACCCATC
CTCTGAGTGTCAACAAGCCTGTGTATTCTATCCGCCCTCCCCCGGCAGTC
AACATTAGACATTAAAAGAAAGTTATGGAGACTGGAAAGATAACATGCTA
TGTCTTTACAGGATTTAGTTAGAGAGGCAGAGAAAGTAACCAGAGAGAGA
TTGAGGAAGAAAAGAAAGAGAGGGAAAAGTGTGAGGAAGAAGAAAGGGAA
AATAGGAGAGATCAAAAGCAGGAGAGAAACTTAAGCAGGATTCTGGCCGC
AGTAGTAGGAGAGTGTGAGGGAAGAGGTACATCTGAAAATAGATGGACAG
GGTACCTAGACAACAGGGAATCTAGACCTGGTGGAAGAAGACCCTTTCAG
AAAAGACCAATGTGCATACTGCATAGAGAAAGGGCACTGGGCACAAGAAT
GCCCTAAGAAGA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTGTTTCCCAGGCTGGTCTTGA
GCACATATTGCAGCTTGCCTCAGGCAGACACACAACAATCCTACCTCAAC
CTCAGCAGAAAAAAGGAATTATATGCATTTCTCATCACACTTTGTTCCTC
AAAATATTTCATATATCAGTGTCCTCATCATCTCTCAATCTTTACCATCT
ACCAATTGGTCAAGCCAAATACTGCATATGCTTCTATAAAGTATAAAGTG
CATCACTGTCTTGAATTACTCCTTCATATCTCATTTTAGAAAAAAATAAC
TGTAATTTATTTAAAATTCGTGNTTATCCATATCATACATATATATATAT
ATATATATAAAGATAAAAACTGTATTCAAGATAAAAAAGAACATACATAA
TTTCTCACCACAGTACTTTTCTGCATGCTTAGGACTGCAACAACCCTTCC
AGTTCCATGCTGCCAAATCAGTTTCTTATGCAAAATAAGACTGCCACCAA
ACAGGAATGGTAATGTGTTTGTTGTCATTTTCTTTTCTTTAAGATTATTT
AAAATTATGTGTTTATTTTTCAGTGAGTGCAATTGCAGGCAAGTGATAAA
ATAGAATGCTGAATTTTCTGAAGCTGGAAGTACAGATGGTTGTTAGCTGT
CTGACATGGTTTGGATGAATAGAACTCTGGTCCTCCGCATAAACATCACA
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g20.g1 MSMg01no330_g20.g1 CHROMAT_FILE:
MSMg01no330_g20.g1 PHD_FILE: MSMg01no330_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:08 2005
         (291 letters)



>mm_chr3_4725743_4726433
          Length = 691

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtttcccaggctggtcttgagcacatattgcagcttgcctcaggcagacacacaacaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtttcccaggctggtcttgagcacatattgcagcttgcctcaggcagacacacaacaatc 264

                                                                       
Query: 65  ctacctcaacctcagcagaaaaaaggaattatatgcatttctcatcacactttgttcctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctacctcaacctcagcagaaaaaaggaattatatgcatttctcatcacactttgttcctc 324

                                                                       
Query: 125 aaaatatttcatatatcagtgtcctcatcatctctcaatctttaccatctaccaattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatatttcatatatcagtgtcctcatcatctctcaatctttaccatctaccaattggt 384

                                                                       
Query: 185 caagccaaatactgcatatgcttctataaagtataaagtgcatcactgtcttgaattact 244
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 385 caagccaaatactgcatatgcttctataaagtataaattgcaacactgtcttgaattact 444

                                                     
Query: 245 ccttcatatctcattttagaaaaaaataactgtaatttattt 286
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccttcatatctcattttagaaaaaaataactgtaatttattt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)