BAC Information

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BAC

Clone NameMSMg01-330K05
Chromosome3 (Build37)
Map Location 124,347,165 - 124,347,403
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
Downstream geneLOC668820, Ndst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330K05.T7 (MSMg01no330_k05.b1)MSMg01-330K05.TJ (MSMg01no330_k05.g1)
ACCAG447140AG447141
length759885
length of high quality
(start - end)
239 (126 - 364)---
definitionCHROMAT_FILE: MSMg01no330_k05.b1 PHD_FILE: MSMg01no330_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:23 2005CHROMAT_FILE: MSMg01no330_k05.g1 PHD_FILE: MSMg01no330_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GAGAATTTTTCCACAAAGCCCTTGAAATATCCAGAGTCATGGTGAATAAA
TATTTGTAGCATGTATTCTCCCCTAGAAATATATGTGTTAATTTACGCAT
AAATACAAACAGCAAAACCACACAAATATACATACAGCAGTAAAACCAAA
GAAGAGCAAATGAGTTTGTTCTGAATAAACACCTAATAGTCCATGCAGCT
CAGATGTATAATAACTTTGAATGTGACAGACTTCACTAGCAGCAAATAAG
CTACAAATTAAACCTAAAGTGAGGTAATATGTTATACTCATATAATTGGC
ATAACTTAATTTTTTTATTCTTTACCCCACCCCGCAACAAAATGGATTAA
TATGCAATCTGTATATAAATATACATAAAATAAATAGTTGTAAATGTAGC
CTTTATTTGCCTGAAGTAATTAATTGTCATCTCAGAGGCTTGATTCTGAA
TAAGCTCAACCTCTCTAGTTCTTTCTGAACTCTGGCTCCTCGTTCAACTA
AGCTGTTTTGGCTCAAAGTCCTCTCCAAACTAACTGATTCATTCTGGCTT
CTCTCTGCTCTCACCCAATTGCTCGGGCTTGCCTTAAACTAACTCTAGCA
ATTTGTTCTAATCTTCTGACTTCTCATTCTCTGGGTCAATCCGACTCCAC
ATGTCTTATCTCAGTAAAATTGAACTCCTCCTTCTCTGGCCTCTAATTTC
TCTATCCCT
AGAAAGAGGAGGAANAAAGCCTAAANNANNCNNNGGAGAAAGANAAGAAG
GAAGAAAAGAGAGGAAGGGNGGAAGGANGNNTTTAGGNGACCGAAAGNNN
NNGNGGNGGNNTTGACAAAAGAAGGGGNNGANGGGGNNNNNNNNNNNNGN
NNGNNGGNGGNGGNTTGTGTNGCAAAAAAAAGGGGGGNNANNANAANGNN
NNGAAAAAAAAAGGAGGGAGGAGGGGANAAGAAGAGAAAGGGGAGGAGGA
GGAAAGAGAAAANAGGAAAAGGGAGAGAAGGAAAGAAAAAAAAGAAAAGA
AATGTTTGAGGAAAGAAAGAAGGAGAAGAGAGAGAAAGGGAGGAGAGGAA
GGAAGAGAAAAAGGGAGATAGTGGTGNTGTTAAAGAGAGGAAGGGAANAG
GAAAGGAGAGATTTTTTTTTTTTAAAAAAAAAAGAGGAGAAGAGAGGGAA
AGGAGAAGGGAAGAGGAGGGGGGGGNNNAAAAAAAAAAAAAAAAAAAAAA
GGGGGGGGGGGGGGGGGGNNNNNNNNNNGNGNNNNNNNNANNAGGAGAAG
GAAGGGGGGGGAGGGGAAGGGGGAAAGGAAGAGGGAGAAAGGAAAAGGGA
GGGAAAGGAGAGGAAAAAGAGAAGGGAAAGAAAAAAGAAGAGAAGAAAAA
GAAGAAGAGAGAAGAAAAGAGAAGAGGGAGAAAGGGGGAGAAAAAGGAAA
AGGAGAGAGGGGAGAAAGAGGAGAAAAAAAAAGGAAAAGATAAAGAGAGG
GAGAAAAAAGGAGTAAGTTTTGAAATAAAAAAAGGGGGAGGGGAAGGAAA
GAGAAGAGAGAAGAGGGGGGGGGGAAAAAAAAGAGAGAAGAAAGAAAGGA
GGGGGGAGGGAGGGAAAAGAAGGAAGGAAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_k05.b1 MSMg01no330_k05.b1 CHROMAT_FILE:
MSMg01no330_k05.b1 PHD_FILE: MSMg01no330_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:23 2005
         (239 letters)



>mm_chr3_124346965_124347603
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatatatgtgttaatttacgcataaatacaaacagcaaaaccacacaaatatacatac 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaatatatgtgctaatttacgcataaatacaaacagcaaaaccacacaaatatacatac 260

                                                                       
Query: 61  agcagtaaaaccaaagaagagcaaatgagtttgttctgaataaacacctaatagtccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagtaaaaccaaagaagagcaaatgagtttgttctgaataaacacctaatagtccatg 320

                                                                       
Query: 121 cagctcagatgtataataactttgaatgtgacagacttcactagcagcaaataagctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctcagatgtataataactttgaatgtgacagacttcactagcagcaaataagctaca 380

                                                                      
Query: 181 aattaaacctaaagtgaggtaatatgttatactcatataattggcataacttaattttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaaacctaaagtgaggtaatatgttatactcatataattggcataacttaattttt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)