BAC Information

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BAC

Clone NameMSMg01-331F19
Chromosome3 (Build37)
Map Location 81,433,469 - 81,433,817
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331F19.T7 (MSMg01no331_f19.b1)MSMg01-331F19.TJ (MSMg01no331_f19.g1)
ACCAG447676AG447677
length757735
length of high quality
(start - end)
350 (66 - 415)99 (196 - 294)
definitionCHROMAT_FILE: MSMg01no331_f19.b1 PHD_FILE: MSMg01no331_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:15 2005CHROMAT_FILE: MSMg01no331_f19.g1 PHD_FILE: MSMg01no331_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTGGCCTCTTTCTGGGTCAGAAGTGATCACTGTCATAATGGGAGATGTAC
TAACATCACAAAGAAGCACTATCTACTCCTGGTGCGTGGCGGAGGTCAAG
GCTCTCAGGTCTTTCCAGAAGACAGGTCCATTTCTCATGATGTCTCCGAA
GCCCTCCAGTTTATGTGAGTCTTCATGAGGTAGAAAATTCATGACACTTG
TGTTTTAAATATAAGGTACGGTTTAAATTTAGTTGCACATAGCTCTTTAG
GTTTCCCTGAGTTACAGAAAACAGTGAAGACATATGAGAATGTAAGTAGG
AAATGTATTTTAGTAGCTCGCATCTAGGAGATTCTTTGGAGTCTGTTTTT
AATTTTCTACATTACCCCCCCCCAAAATCATTCAGCCATTTTCCAAGCTC
CAGTGTCTAGTTAGGACGGTAAGTAAATATGTTAGTGCTCCATGGGGAGG
TATTGTTGCCCAGCCATAGGGCTAAGCTGATCTTAGCAATGTTTCTATAT
CAGGTGGAATTATTAATAGGATAGAATATATTGCATTTCCTTATTTTGCA
CTTTTTGTGCTCCTGATCCCCAATAACCTATTCTATTCTAGCCCCGGGAA
ATGATATGATTTGCCTCTTTAATTTATTTTGCCCTTATTTATTTTTTTTT
TACACTTCTTTTCCTCTTTTTCTTCCTCCCATCTTTCTACTTGGCCTTTC
CCCTTTG
CATGGGGAGGCCTGGCGGCGCCGGGCTTTCCAACCCGCNGAACNANAGAA
GGATTGCGGCACGGCAGCGGAGGAAACCGAAGGGCNGAGAACACCGGAAA
AAGGTTCACACCCAAAAACNCAGGGAANAGAAANCAAAACAACCCGGAGA
ANCCACCNCACANCAGNCAGAAGGGCNAAGAACANAAANNCAGGGGACAG
CAGAAGCNGGAGAGGAGGNGGAGAAAGAGGAGCACTCTTTCTTTGTTGGN
GGGATTGCAAGCTTTTACAACCATTCTGGAAATCAGTCTGGCAGNNCTTC
AGATTTTTTTATTTTGNACNACCAGGGGANCCCGCAAAANCNCNCCGGGG
CACACACCCCCCAAGANGNNCNAACNGGNAAGAAGGACACAGGCNCCACA
AGGCCCACAGCAGCCCNAACCAAAACAGCCAGAAGCAGGAAACAACCCAG
AAGCCCCCCAACAGAGGAACGGACACAGAAAACGCGGCANACCCACACAA
CGGAGAACNACNCAGCNNACAAAAAGAACGAACCNACGAAACNCCAAGCC
AAACGAACGGAACCGGAGGGCACCACCCCGAGGGAGNNAACCCCACCACA
AAAGAAACCACACGACACGCACCCACCGAAAAGCGGAAACCAGCTTTCTA
TTTTTATAACACCCACCATCCCTGATACCCCTCATTAAATAGATGACACT
CTTTGAACACTGAAGACCATTGTGTGCACACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_f19.b1 MSMg01no331_f19.b1 CHROMAT_FILE:
MSMg01no331_f19.b1 PHD_FILE: MSMg01no331_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:15 2005
         (350 letters)



>mm_chr3_81433269_81434018
          Length = 750

 Score =  667 bits (345), Expect = 0.0
 Identities = 348/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagaagtgatcactgtcataatgggagatgtactaacatcacaaagaagcactatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagaagtgatcactgtcataatgggagatgtactaacatcacaaagaagcactatcta 260

                                                                       
Query: 61  ctcctggtgcgtggcggaggtcaaggctctcaggtctttccagaagacaggtccatttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggtgcgtggcggaggtcaaggctctcaggtctttccagaagacaggtccatttct 320

                                                                       
Query: 121 catgatgtctccgaagccctccagtttatgtgagtcttcatgaggtagaaaattcatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgatgtctccgaagccctccagtttatgtgagtcttcatgaggtagaaaattcatgac 380

                                                                       
Query: 181 acttgtgttttaaatataaggtacggtttaaatttagttgcacatagctctttaggtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttgtgttttaaatataaggtacggtttaaatttagttgcacatagctctttaggtttc 440

                                                                       
Query: 241 cctgagttacagaaaacagtgaagacatatgagaatgtaagtaggaaatgtattttagta 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgagttacagaaaacagtgaatacatatgagaatgtaagtaggaaatgtattttagta 500

                                                            
Query: 301 gctcgcatctaggagattctttggagtctgtttttaattttctacatta 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcgcatctaggagattctttggagtctgtttttaattttctacatta 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)