Query= MSMg01no331_g10.b1 MSMg01no331_g10.b1 CHROMAT_FILE:
MSMg01no331_g10.b1 PHD_FILE: MSMg01no331_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:18 2005
(671 letters)
>mm_chr3_75081655_75082724
Length = 1070
Score = 1251 bits (647), Expect = 0.0
Identities = 662/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Minus
Query: 5 gaattcctaggaactcaccggaatctccagtacagtccaaatatgtatgtacttacatac 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gaattcctaggaactaaccggaatctccagtacagtccaaatatgtatgtacttacatac 755
Query: 65 aggaattacggagagcaaagtacaacattcttttagaatctgaagcaatgtcagtaaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aggaattacggagagcaaagtacaacattcttttagaatctgaagcaatgtcagtaaatt 695
Query: 125 gcatgtgttttcttacaacaactttcttctattgcagtcctgcttccatttgatcatgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gcatgtgttttcttacaacaactttcttctattgcagtcctgcttccatttgatcatgag 635
Query: 185 caaagtttctctcccttccctgatgaatgacttttctttctttttcttttttcttttgct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caaagtttctctcccttccctgatgaatgacttttctttctttttcttttttcttttgct 575
Query: 245 gctgctgctactgccttcctagattccacatttgacatgttcttctcattttcttttgcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gctgctgctactgccttcctagattccacatttgacatgttcttctcattttcttttgcc 515
Query: 305 ttctcagttctcagctatttggctgtgttctttataattttctagactgcagattgcacc 364
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 514 ttctcagttctcagctatttggctgtgttctttataattttgtagactgcagattgcacc 455
Query: 365 ttctctctgagcttctatgaaaagggccttttattgtgagaataattttcctttatcttt 424
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 454 ttctctctgagtttctatgaaaagggcctttt-ttgtgagaataattttcctttatcttt 396
Query: 425 cttgttttccaatataaaagatgaaaaagaaaaagagattgaatcttatagccatgtttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cttgttttccaatataaaagatgaaaaagaaaaagagattgaatcttatagccatgtttg 336
Query: 485 tactgctagtaaagattgttgttttttattgtttacttattttgttgtttcgtttttgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tactgctagtaaagattgttgttttttattgtttacttattttgttgtttcgtttttgtg 276
Query: 545 ctttttcaatactatttaccatgctttattttacattttaatatttgtggactgagtata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctttttcaatactatttaccatgctttattttacattttaatatttgtggactgagtata 216
Query: 605 tgatggtgtagggtctgtgtgtgtatgcatatgtatacatgcttgtgtgtgtgtctctat 664
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgatggtgtagtgtctgtgtgtgtatgcatatgtatacatgcttgtgtgtgtgtctctat 156
Query: 665 gtttatt 671
|||||||
Sbjct: 155 gtttatt 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g10.g1 MSMg01no331_g10.g1 CHROMAT_FILE:
MSMg01no331_g10.g1 PHD_FILE: MSMg01no331_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:18 2005
(644 letters)
>mm_chr3_74931493_74932536
Length = 1044
Score = 1201 bits (621), Expect = 0.0
Identities = 635/643 (98%), Gaps = 6/643 (0%)
Strand = Plus / Plus
Query: 1 agtcacgaacaaatgtgatacatttcttataggagttgggattttatcagaagacatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcacgaacaaatgtgatacatttcttataggagttgggattttatcagaagacatgga 260
Query: 61 agagtgagctgcaaatagtaatagaatttttaagaatcccttaattgagtttgcacaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtgagctgcaaatagtaatagaatttttaagaatcccttaattgagtttgcacaaag 320
Query: 121 tgataatgggattaaagtggaatgaacttagcctgtgttgttggaataagtaccattcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgataatgggattaaagtggaatgaacttagcctgtgttgttggaataagtaccattcat 380
Query: 181 acccaagcaatagtaaaaaaaaaaaaaaaatgacagtacccagatgtcaaatgtatttta 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 acccaagcaatagtaaaaaaaaaa------tgacagtacccagatgtcaaatgtatttta 434
Query: 241 aatattttacttttccctgtagtacagcattaatatttatcagtttatagtattcccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aatattttacttttccctgtagtacagcattaatatttatcagtttatagtattcccaga 494
Query: 301 aacattttgtaatttgactataagatcaagtgagcatgtgatcattccctttgaaaggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aacattttgtaatttgactataagatcaagtgagcatgtgatcattccctttgaaaggta 554
Query: 361 acttcttcctatctgcctcactctatcttattgatgactttagaagaagagacagagtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acttcttcctatctgcctcactctatcttattgatgactttagaagaagagacagagtaa 614
Query: 421 ggtctactctgatcattcctggctccagagtggaatgggttgcaatttagattacagtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ggtctactctgatcattcctggctccagagtggaatgggttgcaatttagattacagtca 674
Query: 481 acctcctgggtaactctacctatcaaaggatgtttagataattctaggagaattaggtta 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 675 acctcctgggtaactctacctaccaaaggatgtttagataattctaggagaattaggtta 734
Query: 541 ttgtctaaatacccatggcacgactggtgaattttagtgtgtctgtagtatagctgctct 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttgtctaaatacccatggcatgactggtgaattttagtgtgtctgtagtatagctgctct 794
Query: 601 tcctatttattccttcacacttgaatactgacttctcagtttc 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcctatttattccttcacacttgaatactgacttctcagtttc 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
