Query= MSMg01no332_h22.b1 MSMg01no332_h22.b1 CHROMAT_FILE:
MSMg01no332_h22.b1 PHD_FILE: MSMg01no332_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:59 2005
(504 letters)
>mm_chr3_13455235_13456137
Length = 903
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 1 gaaaggcagcatattcttcaagtttataagatactcgtagtcagtttaaatgcaacgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaaaggcagcatattcttcaagtttataagatactcgtagtcagtttaaatgcaacgtgc 644
Query: 61 aggaaacaatacaaaatcaatccaaaatgagcaggtttctcagatcacctctttaaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aggaaacaatacaaaatcaatccaaaatgagcaggtttctcagatcacctctttaaagga 584
Query: 121 agattcaaaaacaggatattcgtgttatgcaaattatacctgggatatttgcaaacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agattcaaaaacaggatattcgtgttatgcaaattatacctgggatatttgcaaacagta 524
Query: 181 gtaatattcacatattaagaagctgttgctgaaatagtataaaattggtgatcgtgaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtaatattcacatattaagaagctgttgctgaaatagtataaaattggtgatcgtgaata 464
Query: 241 acataattaaaatataaatgctcacttttttctcttgaacaagtaaacctaatcctttta 300
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 463 acataattaaaatataaatgctcacataattctcttgaacaagtaaacctaatcctttta 404
Query: 301 aatatgatgtttattcatcataagaaaaatgcgtcctgtcaagagaaactaattggcaac 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 403 aatatgatgtttattcatcataagaaaaatgcatcctgtcaagagaaactaattggcaac 344
Query: 361 atatttagttagaatatgactgcaaaactgtaattacaagctttgccatcttatgacgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atatttagttagaatatgactgcaaaactgtaattacaagctttgccatcttatgacgaa 284
Query: 421 ataacaaaactaacttcttaaaaaaaaaaaagtctcatctttccctcaagtaaacatttc 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ataacaaaactaacttctt-aaaaaaaaaaagtctcatctttccctcaagtaaacatttc 225
Query: 481 agaccaatcgttggaaactatcat 504
||||||||||||||||||||||||
Sbjct: 224 agaccaatcgttggaaactatcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_h22.g1 MSMg01no332_h22.g1 CHROMAT_FILE:
MSMg01no332_h22.g1 PHD_FILE: MSMg01no332_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:00 2005
(714 letters)
>mm_chr3_13289020_13290135
Length = 1116
Score = 1263 bits (653), Expect = 0.0
Identities = 700/719 (97%), Gaps = 10/719 (1%)
Strand = Plus / Plus
Query: 1 attccccaccacccc---ccctggttaccaccagtatgagtgttatatcctggactttta 57
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attctccacccccccccaccctggttaccaccagtatgagtgttatatcctggactttta 258
Query: 58 tctgtatac-gccactgtagatttcattttggaggctataccattaatgatacaattcct 116
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctgtatacagccactgtagatttcattttggaggctataccattaatgatacaattcct 318
Query: 117 acagctctgctttagcctaatcagaaaacttatttttctagattaatttaagctgccaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acagctctgctttagcctaatcagaaaacttatttttctagattaatttaagctgccaat 378
Query: 177 aatataagtttattaaaacttggagttaagcaaaaaagcttagggtactgtattagtcag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatataagtttattaaaacttggagttaagcaaaaaagcttagggtactgtattagtcag 438
Query: 237 ggttttactgctgtaaacagacaccatgaccaaggctagttttataaaaaaaaaaaacaa 296
|||||||||||||||||||||||||||||||||||| ||| |||| |||||||| |||
Sbjct: 439 ggttttactgctgtaaacagacaccatgaccaaggcaagtcttat---aaaaaaaaccaa 495
Query: 297 catttaattggggctggcttacaggttcagagtttcagtccattatcatcaaggtgggag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catttaattggggctggcttacaggttcagagtttcagtccattatcatcaaggtgggag 555
Query: 357 catggcagtatccaggcaggcatggcacaggaggagtaagagttctatgtctt-atccaa 415
||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 556 catggcagtatccaggcaggcatggtgcaggaggagtaagagttc--tgtcttcatccaa 613
Query: 416 aggctgctagtggaagactgacttccaggcaactagggtgaggatcttatacacacaccc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggctgctagtggaagactgacttccaggcaactagggtgaggatcttatacacacaccc 673
Query: 476 acagtgacacacccattccaaccgggtcacaccttcagatggtgccactccttggtccaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acagtgacacacccattccaaccgggtcacaccttcagatggtgccactccttggtccaa 733
Query: 536 ggatatacaaaccatcacaggtacacatccatgtttctaatttcagtgagccgtttttaa 595
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 734 ggatatacaaaccatcacaggtacacatccatgtttctaatttcagtgagccatttttaa 793
Query: 596 atgtgtgaaacattgattggtatactatcagagaaatatctaaattgataatgtgaccat 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atgtgtgaaacattgattggtatactatcagagaaatatctaaattgataatgtgaccat 853
Query: 656 tctactcagtcatatggaatttataatgagaggaaagaacaattattttggatttttat 714
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 854 tctactcagtcatatggaatttataatgagaggaaagaacagttattttggatttttat 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1116
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1106
Effective search space: 778624
Effective search space used: 778624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
