BAC Information

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BAC

Clone NameMSMg01-332I15
Chromosome3 (Build37)
Map Location 79,770,667 - 79,771,295
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332I15.T7 (MSMg01no332_i15.b1)MSMg01-332I15.TJ (MSMg01no332_i15.g1)
ACCAG448545AG448546
length1,2461,294
length of high quality
(start - end)
---735 (89 - 823)
definitionCHROMAT_FILE: MSMg01no332_i15.b1 PHD_FILE: MSMg01no332_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:05 2005CHROMAT_FILE: MSMg01no332_i15.g1 PHD_FILE: MSMg01no332_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGCATAGGNNNNCCATCGCGCTAAGACTACTATAGGAGAGGATCGC
GGAATCAGTTAAGCTCTTTAAGCCATACAAATCTGCTTTCTCTGNATTGG
GAAATCAATGTACCTTAAGACAGTGGTCCTGCTAAATATCAAAACTTCGC
TTGTTTAGAATANNNNNNNNAACTAATGTAAGTTTATGGAGTTGTGACTT
AAATCATCTGTCAAGATCAAATGGACTCACGCGNNNANNNNAAGGGACGN
NNNAAAAAAAANNAAAAGTCGGGAAAAAAACACTCAGGGCTTTTCGTCCA
AATCAAAGNNNNNNNNNNNCCANNNNNTCTGGGAACAGACTGCGGGATCC
CCNNNNNNNNNNNNTTACCCCCCCAAAGATTANNNNNAAAAATCGAANNN
ATAAAAAAAAAGANNNNCACCCAAAAAAAACAGACTNNNNNNNNGNNNNN
NNNNNNGGAGAAAAAAAGAGAAATAAANNNNNNAATTATTAGGGGGTTTA
AAAACACCGGTTTTAAAAACCCCTTGGAAAAAAAAACCCCCCCCCNNNNT
CTCCTTTCTTCTTNAAAAAAAAGGGCCCCCAAAAAAATTTTTTTTTTTAA
AAAAAGGGGGGGGGGGGGCCCCACAAAAACCCAAAAGGGGGGGGGAAAAA
CTCTCCCAAAAAAAAAAACACTAAAAAAAAAATTTTTTGTTTTTAGAANN
CCCCCGGGGTGGTTTGTTTGGGGAAAAAAAAAAAAAAATGGCTTTTTTTT
TTTTAAAAAAAAAAAAAATAGGGGAAAAANTTTTTTTTTTTCTTCCCCCC
CCCCGGCGCGGAAGAAAAAAAAAAAGNNNTGTTNTTTTNTTTCCCCCCCC
CCCCCNCNAAGGAGGGGGAGGGGANATTTTTTTCTCCCCGGGGGGGGGGG
GGGGGGGGGGGNTTTTTTNNNNANAAAAAAAAAAAAAATTTAATTTTATA
GGGGGGAGGGGAAAAAAAAAAAAAGAAATATTTTTTTTTTTTTTTGGGGT
GGGAGGCAAATTAAAAATNCCCAACCCCAGGGGGGAAAATTTTTCCAATC
TCANNNNNNNNNNNNNNNNGANANNNGGAGAAAGTAGGAAGAAGGAGGTG
TGAGAAGNGNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNTTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNGAGTTANTAANANNT
CAAATCCTTTNNNNAAGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAAGAGACACAAGGTCCA
AACCAAAGTCAAGAATAAAAACTTGTATTTTCTCAAATCAGAGGATAATT
GCACATTTCTGAACTACCATTTTAATGTTCAGATTTTATTTACATAGTAA
AAACAACTTCACAGTACATTTTCAGGAAGACACTAAAATTTATTGAGATA
TTAGTTTGAAATATGTAAAGTATAAAGTGCTAATGAAGAAAAACTGAAGA
ATCCAGAGATTAAAATGGAATTAATAAATAAAATACTTAGGTGCTTGCCA
AAACTATGTACATGCTCAGCATCTTAACAAGTCAGAACAAAAGCCAAGCA
TTTCTTGACCAGAATATATGAGCTGGGACAAAGTGCTGCTCCTTGGAGGA
CTGGAGATTGTAGGAGGTGCCTTCCTGACCAAGGAAAACTCTGCCACAGT
TGTTTCTCAAAGATAACATTGAGGAACTTCTCTAAACCAAGCCTGCGCAT
AAGCAACTCTAATGCATTCTCTTAGTTAATCCAAACAGCATCTTTATCAG
ATGCGTATTGCTGACTCATTCCCACCTTAAAACGTAAAAGCCTGGGGCTA
AGAAAATCGGCAGTTTGTCCAAGGACACAAGGCAGAGTGTCCTGACTGGG
TCTCAAACCCGGAGCCTACAAACAAGGTCAGATTTTTGCCACTGTGTTCT
GCTGTGTCTTGGCCAATAATGAAGACAATTAAATAATGAACAACTAAAAA
CATTGGCTTTCCCATCATTTTTTAAGGAAACAGAATTGTTGGCTTCCCAA
TCACCCTTGGAGGGGTAGAACTCAAGGTTCAGGCATGAGCTCATAGGCTT
AAAAGGAAGAACAGCTTCCTTATCTAGGTGCCTTTTTTTTCCTGTAAAAT
GTGGTAATAATGACTATAACTGTTATGAAAACTGAATGAGCCCCCGAACG
TAAATACCCCAGCACAAAAGCCACTGGCCCTGGAACCCCACACTGGCCCT
CACTTTTTTTTTTTTTTTTACCCTTCGAAAAAAAGTGCCCGGTGGTTCCC
CCCCCCGGGGCTCCCGGTCCCTCGAAAGAAGTTGGGAAAAATATTTTCTC
CTTTCCAACAAGGGGTGTGTACCGTTAAACACAAAAATCTCTCCACTTAT
AAAAGTTGAATAAACATTAACTTTGTTTCTTTTTAATATAAAATTCTTGT
TGCCCCCACTCCTCTTATAAATAAAATATTATTCTCACCATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_i15.g1 MSMg01no332_i15.g1 CHROMAT_FILE:
MSMg01no332_i15.g1 PHD_FILE: MSMg01no332_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:05 2005
         (735 letters)



>mm_chr3_79770667_79771801
          Length = 1135

 Score = 1116 bits (577), Expect = 0.0
 Identities = 616/629 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaaggtccaaaccaaagtcaagaataaaaacttgtattttctcaaatcagaggataa 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 629 acacaaggtccaaaccaaagtcaagaataaaaacatgtattttctcaaatcagaggataa 570

                                                                       
Query: 61  ttgcacatttctgaactaccattttaatgttcagattttatttacatagtaaaaacaact 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgcacatttctgaactgccattttaatgttcagattttatttacatagtaaaaacaact 510

                                                                       
Query: 121 tcacagtacattttcaggaagacactaaaatttattgagatattagtttgaaatatgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tcacagtacattttcaggaagacactaaaatttattgagatattagtttgaaatatgtaa 450

                                                                       
Query: 181 agtataaagtgctaatgaagaaaaactgaagaatccagagattaaaatggaattaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtataaagtgctaatgaagaaaaactgaagaatccagagattaaaatggaattaataaa 390

                                                                       
Query: 241 taaaatacttaggtgcttgccaaaactatgtacatgctcagcatcttaacaagtcagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taaaatacttaggtgcttgccaaaactatgtacatgctcagcatcttaacaagtcagaac 330

                                                                       
Query: 301 aaaagccaagcatttcttgaccagaatatatgagctgggacaaagtgctgctccttggag 360
           |||||||| ||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 329 aaaagccaggcatttcttgaccagaagagatgtgctgggacaaagtgctgctccttggag 270

                                                                       
Query: 361 gactggagattgtaggaggtgccttcctgaccaaggaaaactctgccacagttgtttctc 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 269 gactggagattgtaggaggtgccttcctgaccaaggaaaaccctgccacagttgtttctc 210

                                                                       
Query: 421 aaagataacattgaggaacttctctaaaccaagcctgcgcataagcaactctaatgcatt 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 209 aaagataacattgaggaacttctctaaaccaagcctgcgcataggcaactctaatgcatt 150

                                                                       
Query: 481 ctcttagttaatccaaacagcatctttatcagatgcgtattgctgactcattcccacctt 540
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 149 ctcttacttaatccaaacagcatctttatcagatgcgtgttgctgactcattcccacctt 90

                                                                       
Query: 541 aaaacgtaaaagcctggggctaagaaaatcggcagtttgtccaaggacacaaggcagagt 600
           | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  acaacttaaaaacctggggctaagaaaatcggcagtttgtccaaggacacaaggcagagt 30

                                        
Query: 601 gtcctgactgggtctcaaacccggagcct 629
           |||||||||||||||||||||||||||||
Sbjct: 29  gtcctgactgggtctcaaacccggagcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space:   815625
Effective search space used:   815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)