CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCAAGCAGCGCGGAA
TTCTCAAGTGTTCCCGGCTCTGGATGGCCTTTCCTTCAGTCTCTGCTCCA
CAATTTGTCTCAATATTTCCTCTTGTGAGTATTTTGTTCCCCCTTCTAAG
AAGCACTGAAGCATCCACACTTTGGGCTCCTTTCTTCTTGACCTTCATGT
GTTCTGTGAATTGTATCTTGGGTATTCGAAGCTTTTGGGCTAATATCCAC
TTATCAGTGAGTGTATACCTTGTGTATTCTTTTGTGACTGGACTACCTCA
TTCATAATGATATTTTAAAATTCTATCCATTTGCCTAAGAATTTCATGTA
TTCATTGATTTTAATAATTAGTAGTATTCCATTATGTAAATGTACCAGAT
TTTCTGTATCCATTTCTCTGTTGAAGGACATCTGGGATCTTTTTGGCTTC
TGTCTATTATAAATGAAGCTGCAAGAACATGATGAAGCATGTGTCCTTGT
TACATGTTGGAATCTTTTAGGTATTTGCATATGAATGGTATAACTGGGTC
CCCAGGTGGTACTAAGTCCAATTTTCTGAGGAACCATCAAACTTATTTTC
ACAGTGGTAGTACCAGCTTGCAATCCCACCAACAGTGGAATAGTGTTTCT
CTTTCTCCACATCCTCTCCAGCATCTGCTGTCACCTGTGTGTTTGATCTT
AGCTGTTCTGACTG

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAGTTTCTCATCTGTTTTT
CACATTTATTACCACGGTTACTATCCCATCAATTACAGGGAGGGAAAAGA
TTGAACCCACTAATGATGTGCTATGTCCTGCATTTCAATTGTGCTAATTT
CATAGTGTTTAAGTTATGTGTCATTTCTTATACAATTTTTAAAAAATGTT
TATCAGTTTTTCAAACAGAGACACTACATATTCTAGTGAGAGCAAGAAAT
GATTGTTTAGAAGCTATTTTCTGAATTTCAAATTCTTTCAGAATATGAAA
TTTCAAACATGAAAACTTAAGTAATAAATTTTATGCTCAAGATGATTGAT
GGGTTCATTGATGGATTTTTAATAACCACACACTATCTTTAAATCACGTT
GCAGCCCACACTTTTATAATCTAAAGAAGCTCCTTGGAAACTTATTTTTA
GAAAAGCTTCTTTTCTTCAGAAAACTATATCTAACAGAAATGCTTTACTG
AAGTATGTCCAAATGAGACATGAAGTGATGTGATTTTGATATAAAAATAC
CACTGGGATAGTTACTGATGTCAAAATATTTTANAAACAAAGATAAACAT
AAAGGAAATGCAAATACTTTATGAGTGTTTGAAAAAAAATGGATAGAGCC
AATACAAGGTTTTTT

Query= MSMg01no333_n16.g1 MSMg01no333_n16.g1 CHROMAT_FILE:
MSMg01no333_n16.g1 PHD_FILE: MSMg01no333_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:07 2005
         (572 letters)



>mm_chr3_4448159_4449129
          Length = 971

 Score = 1077 bits (557), Expect = 0.0
 Identities = 568/572 (99%), Gaps = 1/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagagtttctcatctgtttttcacatttattaccacggttactatcccatcaattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agcagagtttctcatctgtttttcacatttattaccacggttactatcccatcaattaca 712

                                                                       
Query: 61  gggagggaaaagattgaacccactaatgatgtgctatgtcctgcatttcaattgtgctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gggagggaaaagattgaacccactaatgatgtgctatgtcctgcatttcaattgtgctaa 652

                                                                       
Query: 121 tttcatagtgtttaagttatgtgtcatttcttatacaatttttaaaaaatgtttatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tttcatagtgtttaagttatgtgtcatttcttatacaatttttaaaaaatgtttatcagt 592

                                                                       
Query: 181 ttttcaaacagagacactacatattctagtgagagcaagaaatgattgtttagaagctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttttcaaacagagacactacatattctagtgagagcaagaaatgattgtttagaagctat 532

                                                                       
Query: 241 tttctgaatttcaaattctttcagaatatgaaatttcaaacatgaaaacttaagtaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttctgaatttcaaattctttcagaatatgaaatttcaaacatgaaaacttaagtaataa 472

                                                                       
Query: 301 attttatgctcaagatgattgatgggttcattgatggatttttaataaccacacactatc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 471 attttatgctcaagatgattgatgggttcattgatggatttttaataagcacacactatc 412

                                                                       
Query: 361 tttaaatcacgttgcagcccacacttttataatctaaagaagctccttggaaacttattt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 tttaaatcacgttgcagcccacacttttataatctaaagaagctcctt-gaaacttattt 353

                                                                       
Query: 421 ttagaaaagcttcttttcttcagaaaactatatctaacagaaatgctttactgaagtatg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 352 ttagaaaagcttcttttcttcagaaaactatatctaacagaaatgctttactaaagtatg 293

                                                                       
Query: 481 tccaaatgagacatgaagtgatgtgattttgatataaaaataccactgggatagttactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tccaaatgagacatgaagtgatgtgattttgatataaaaataccactgggatagttactg 233

                                           
Query: 541 atgtcaaaatattttanaaacaaagataaaca 572
           |||||||||||||||| |||||||||||||||
Sbjct: 232 atgtcaaaatattttaaaaacaaagataaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 971
Length adjustment: 10
Effective length of query: 562
Effective length of database: 961
Effective search space:   540082
Effective search space used:   540082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)