Query= MSMg01no334_p03.b1 MSMg01no334_p03.b1 CHROMAT_FILE:
MSMg01no334_p03.b1 PHD_FILE: MSMg01no334_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:32 2005
(512 letters)
>mm_chr3_70762204_70763115
Length = 912
Score = 944 bits (488), Expect = 0.0
Identities = 503/508 (99%)
Strand = Plus / Plus
Query: 5 gaattcttctgagtcttcattcaagtaagtctcccatgaaataatgggacagaatgggtc 64
||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctgaggcttaattcaaataagtctcccatgaaataatgggacagaatgggtc 264
Query: 65 tttaagcccatgtgtagtgatccctgtgtactgaattgtatgtaaacacagtgttgtgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaagcccatgtgtagtgatccctgtgtactgaattgtatgtaaacacagtgttgtgcc 324
Query: 125 agaaactgtttctgaaccctaaaaagagcaccaaggatccaaatctgatgtaattgcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaaactgtttctgaaccctaaaaagagcaccaaggatccaaatctgatgtaattgcatt 384
Query: 185 agggtcttttattgaaggtcgagctggggccataccaccaattctgacacaggagaatgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggtcttttattgaaggtcgagctggggccataccaccaattctgacacaggagaatgg 444
Query: 245 gaaggggtcccaagcccagtttcaggagagtatttatagaggcaagaagtgggtatctag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaggggtcccaagcccagtttcaggagagtatttatagaggcaagaagtgggtatctaa 504
Query: 305 tctgctacatatctgaatgggtgtgggtggcatgatattctttaacctaactgcttggtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgctacatatctgaatgggtgtgggtggcatgatattctttaacctaactgcttggtg 564
Query: 365 ctgggagccaaaccataagcttctgttttcctcctgatccatggttcttaggacgtgaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgggagccaaaccataagcttctgttttcctcctgatccatggttcttaggacgtgaag 624
Query: 425 tattaggggtaggcttggaacctggaggtacagatttgttggggaataaccgggaaactg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tattaggggtaggcttggaacctggaggtacagatttgttggggaataaccggaaaactg 684
Query: 485 gttctggacataggattttttgggaggt 512
||||||||||||||||||||||||||||
Sbjct: 685 gttctggacataggattttttgggaggt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_p03.g1 MSMg01no334_p03.g1 CHROMAT_FILE:
MSMg01no334_p03.g1 PHD_FILE: MSMg01no334_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:32 2005
(566 letters)
>mm_chr3_70917993_70918959
Length = 967
Score = 1036 bits (536), Expect = 0.0
Identities = 560/568 (98%), Gaps = 3/568 (0%)
Strand = Plus / Minus
Query: 1 agaaactatctaatttaagggaaaatacatatgttccaaaattgagaaataatctttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agaaactatctaatttaagggaaaatacatatgttccaaaattgagaaataatctttcaa 708
Query: 61 tatagtacctac-aaaaaagaatatttctgtcctaggtttcaggttgtcacctagtgaaa 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tatagtacctacaaaaaaagaatatttctgtcctaggtttcaggttgtcacctagtgaaa 648
Query: 120 ataattaataaaatacagtatggggaaaagctaattaaacagaatacagatgacaggata 179
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 647 ataattaataaaatacagtat-ggaaaaagctaattaaacagaatacagatgacaggata 589
Query: 180 aaatgatgaacatgtctggaatggaactaaagctgaggaacaattcttttcatgaagaag 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 588 aaatgatgaacatgtctggaatggacctaaagctgaggaacaattcttttcatgaagaag 529
Query: 240 agacgttttatcaaacaaaacaagtgagctcctaacattaaggagacctgttaacaaggt 299
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agacattttaacaaacaaaacaagtgagctcctaacattaaggagacctgttaacaaggt 469
Query: 300 ctaactaatatttat-caaagtataatgcaaatattgagctaaacgtctaaacattaaag 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctaactaatatttatacaaagtataatgcaaatattgagctaaacgtctaaacattaaag 409
Query: 359 gtaaaagtaatacaacagtaaaatcatcaacaagtacagttagactgagtccatagagac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gtaaaagtaatacaacagtaaaatcatcaacaagtacagttagactgagtccatagagac 349
Query: 419 ataaaataaatgctatctaaagagtgtggatcagacttttaagacaatgaaaattagttg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ataaaataaatgctatctaaagagtgtggatcagacttttaagacaatgaaaattagttg 289
Query: 479 tggcctgtgagagaatatttataaactatgcatatgacaagagttgggatcaaaggtaaa 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 288 tggcctgtgagagaatatttataaactaggcatatgacaagagttgggatcaaaggtaaa 229
Query: 539 tatagtgatttaaaattcaacattaaaa 566
||||||||||||||||||||||||||||
Sbjct: 228 tatagtgatttaaaattcaacattaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
