Query= MSMg01no334_p07.b1 MSMg01no334_p07.b1 CHROMAT_FILE:
MSMg01no334_p07.b1 PHD_FILE: MSMg01no334_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:33 2005
(593 letters)
>mm_chr3_72159905_72160897
Length = 993
Score = 882 bits (456), Expect = 0.0
Identities = 464/467 (99%)
Strand = Plus / Minus
Query: 127 gtgctggattcttgtgatggcaaattgtcttggatattatttttagtgcatttgcactgt 186
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 993 gtgctggattcttgtgatggcaaattgtcttggatattattttttgtgcatttgcactgt 934
Query: 187 tgtctggggttgtgataattaatgtgtttctaggtgtttacatcaaactttttctgcagt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tgtctggggttgtgataattaatgtgtttctaggtgtttacatcaaactttttctgcagt 874
Query: 247 ttgagtgttttatttcttcatttcccttttgttcttggcatcttaagaaactgcagtcat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ttgagtgttttatttcttcatttcccttttgttcttggcatcttaagaaactgcagtcat 814
Query: 307 tgtgagttgcctgttagggactgctagtgtatgagagtgggttgatttgaaaataaaggc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgtgagttgcctgttagggactgctagtgtatgagagtgggttgatttgaaaataaaggc 754
Query: 367 tgaggaatagctaaagtgattctgttcaaatctaggcatatagcccaacaggatttggac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgaggaatagctaaagtgattctgttcaaatctaggcatatagcccaacaggatttggac 694
Query: 427 atgtgaccacaaagatcacttgatactgcaagtcagtttaaggaagacaaagaattatta 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 693 atgtgaccacaaagatcacttgatactgcaagtcagtttaagaaagacaaagaattatta 634
Query: 487 gaaaaagacaggtatgaaagagctaggggaactgtgggttggcgccaaacattctaagtc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaaaaagacaggtatgaaagagctaggggaactgtgggttggcgccaaacattctaagtc 574
Query: 547 tccagttagtgaagatgaagtagaanacagagcacctgtaagcaggt 593
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 573 tccagttagtgaagatgaagtagaaaacagagcacctgtaagcaggt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_p07.g1 MSMg01no334_p07.g1 CHROMAT_FILE:
MSMg01no334_p07.g1 PHD_FILE: MSMg01no334_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:33 2005
(582 letters)
>mm_chr3_72084815_72085792
Length = 978
Score = 984 bits (509), Expect = 0.0
Identities = 564/585 (96%), Gaps = 7/585 (1%)
Strand = Plus / Plus
Query: 1 agatgtaaatctgctcattgtgcctggaaaatattgttacttagacggggttcatctcat 60
||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 198 agatgtaaagctgctcattgtgcctggaaaatgttgttacttagatggggttcatctcat 257
Query: 61 atcaactgagtcccagaacatatt--aaaaaaaaatcattcactaggattaagttgactt 118
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 258 atcaactgagtcccagaacatatttaaaaaaaaaatcattcactaggattaacttgactt 317
Query: 119 tgtctcagagacacaagtgtggtatgtatgaaagtgtatttcagccaataaatagattaa 178
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 tgtctcagagacgcaaatgtggtatgtatgaaagtgtatttcagctaataaatagattaa 377
Query: 179 atgacagaaaacacatgatcatcctaatagaaacagaataggaccttgacataatctaat 238
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgacagaaaacacatgatcatcttaatagaaacagaataggaccttgacataatctaat 437
Query: 239 accctttcataatcatggtcctagagagactagggttgtgaagttcaaatctctacataa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 accctttcataatcatggtcctagagagactagggttgtgaagttcaaatctctacataa 497
Query: 299 taaaggcaacttaaataaaagaataaccaaaatcaataaaaa-gagaaagctatttttat 357
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 498 taaaggcaatttaaataaaagaataaccaaaatcaataaaaaagagaaagctatttttat 557
Query: 358 ttttttataattttattttattattttaatagaatattaccttttaaaataaattgccaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 558 ttttttataattttattttattattttaatagaatattaccttttaaaataaattaccaa 617
Query: 418 atgaaattaatataaatatttagggcataccaggctgtctaagtttatttcatatttaaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 618 atgaaattaatataaatatttagggcataccaggctgtctaagtttatttcgtatttaaa 677
Query: 478 atgtgaaatattattaattgttaactacatgtcaattattaaatacctggatgaatagat 537
||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 678 atgtgaaatattatt----gtttactacatgtcaattattaaatatctggatgaatagat 733
Query: 538 gttgatattataaaagaataataaattgactataacatatgtaat 582
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 734 gttgatattataaaagaatagtaaattgactataacatatgtaat 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 978
Length adjustment: 10
Effective length of query: 572
Effective length of database: 968
Effective search space: 553696
Effective search space used: 553696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
