XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATGA
AAATGTTGACACATAATGTCCAAACTTATGGGACACAATGAAAGCAGTGC
TCAAGGGAAAGCCCATAGCACTATATGCCTTCCTAAAGAAATTATTGAGA
TTTCATACTTTGAATACCTGAAAGCTCTGCACAAGAAGAAATTAACACAC
CCAGGAGGAGGTCATGGCAGGAAATAATCAAAATGAAGAGTTGGTTCCTT
GAGACGATCAACATGATAAACAAATCCATAGCCAAACTAACTGAAAGGCA
GAAAGACATTCCCCAAATCAACGAAATCAGAAATGAAAGGGTGGCATAGC
AACAGATATTGAGGAAATCCAAAGAATCGTTAGATCAAACACCTGTATTC
TACAAAATTGGAAAATCTAAACAAAATGTACAATTTCCACAATAGATACT
ACTTACCAAAATTAAATGAAGGTCAGGTAAATGATTTAAATATTCTCATA
ACTCTTAAGGAAATATAAGTAGTCATTAAAAGTTTCCCAAAGAAAAAACC
CAGAGTCAGATGGTTTTAGCACGTAATTCTTTCAGTTATCCAAGAAATGA
TAATAGCAATACTTCCCAAACTACTCCACAAATAAACACAGAAGGACCAC
TACCAAATTGATTCTATGAGGCCACAGTCACCCTGATACCTATACCACAC
AAAGACTTAACAAAGAGAATCTCTGGN

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGTTCTGTACCCCATTTT
TAATAGCGTTATTTTTTTTCTGAGCCCAACTTATTGAATTCTTTGTATAT
ATTGGATATTAGCCCCTTATTGGATTTAGCATTGGTAAAGATCTTTTCCC
AATCTGTTTTTTGCCATTTTGTCTTATTGACATATCCTTTGTCTTACAGA
AGCTTTGCAATTTTTTGGTGAATTTTTTGCAATTTGCAGATTATTGGCTG
TACTGCTCTAGCATTCTCTGCTTTATTCTTTAAAGATAAAATTTCTAACC
AAACCAGAAACCTGGCTGGAAGCCAGCAAACTCCTGCAGTTCTATGATCT
CTAAACCTGCAGGATTTTAGCACTGAATTATAGGGACGCCTGTGGCCATA
CCTAGCTTTTTACATAAACACTTTATATTTGAACACTGGTTCTCATACTT
ATCCCCCAAATATGTTCATCTTACCAGTTTGAAACTACATTTTAAAAATC
CATATTAGAGAAAGAAGTGGTAGACATGTGCAGGTAAATCCGTGTTTGTG
GATATTCAGGAAGTAATTAACTGATACTGAANAGCATACGAACTGCTAGC
CATGCACTGGACTCTTTCAGAATTAGCATCCTGGGGCTTAATTTTCTAGT
CTTAGTGAATGTCACCATAACTGAGTGACTAAGGTACAA

Query= MSMg01no335_g23.g1 MSMg01no335_g23.g1 CHROMAT_FILE:
MSMg01no335_g23.g1 PHD_FILE: MSMg01no335_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:12 2005
         (573 letters)



>mm_chr3_139952288_139953260
          Length = 973

 Score = 1073 bits (555), Expect = 0.0
 Identities = 569/574 (99%), Gaps = 1/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgttttgttctgtaccccatttttaatagcgttatttttttt-ctgagcccaacttat 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 200 tttgttttgttctgtaccccatttttaatagcgttatttttttttctgagcccaacttat 259

                                                                       
Query: 60  tgaattctttgtatatattggatattagccccttattggatttagcattggtaaagatct 119
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgaattctttgtatatattgggtattagccccttattggatttagcattggtaaagatct 319

                                                                       
Query: 120 tttcccaatctgttttttgccattttgtcttattgacatatcctttgtcttacagaagct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttcccaatctgttttttgccattttgtcttattgacatatcctttgtcttacagaagct 379

                                                                       
Query: 180 ttgcaattttttggtgaattttttgcaatttgcagattattggctgtactgctctagcat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgcaattttttggtgaattttttgcaatttgcagattattggctgtactgctctagcat 439

                                                                       
Query: 240 tctctgctttattctttaaagataaaatttctaaccaaaccagaaacctggctggaagcc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctctgctttattctttaaagataaaatttctaaccaaaccagaaacctggctggaagcc 499

                                                                       
Query: 300 agcaaactcctgcagttctatgatctctaaacctgcaggattttagcactgaattatagg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcaaactcctgcagttctatgatctctaaacctgcaggattttagcactgaattatagg 559

                                                                       
Query: 360 gacgcctgtggccatacctagctttttacataaacactttatatttgaacactggttctc 419
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gatgcctgtggccatacctagctttttacataagcactttatatttgaacactggttctc 619

                                                                       
Query: 420 atacttatcccccaaatatgttcatcttaccagtttgaaactacattttaaaaatccata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atacttatcccccaaatatgttcatcttaccagtttgaaactacattttaaaaatccata 679

                                                                       
Query: 480 ttagagaaagaagtggtagacatgtgcaggtaaatccgtgtttgtggatattcaggaagt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttagagaaagaagtggtagacatgtgcaggtaaatccgtgtttgtggatattcaggaagt 739

                                             
Query: 540 aattaactgatactgaanagcatacgaactgcta 573
           ||||||||||||||||| ||||||||||||||||
Sbjct: 740 aattaactgatactgaaaagcatacgaactgcta 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)