Query= MSMg01no335_m10.b1 MSMg01no335_m10.b1 CHROMAT_FILE:
MSMg01no335_m10.b1 PHD_FILE: MSMg01no335_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:39 2005
(239 letters)
>mm_chr3_122862102_122862740
Length = 639
Score = 441 bits (228), Expect = e-128
Identities = 237/240 (98%), Gaps = 2/240 (0%)
Strand = Plus / Minus
Query: 1 ttccttaatggcataatgaagtcaagccagttatatcccacatcctagaccttgcagtca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 ttccttaatggcataatgaagtcaagccagttatatcccacgtcctagaccttgcagtca 380
Query: 61 cataacaggagggattgctccaaactgcaaaaccagctgctgtcattgctgtcggccatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cataacaggagggattgctccaaactgcaaaaccagctgctgtcattgctgtcggccatt 320
Query: 121 ttgcccctatacttcttggagccgtgttcagagcttcttggtcctggtgtaagtaaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgcccctatacttcttggagccgtgttcagagcttcttggtcctggtgtaagtaaagtg 260
Query: 181 ccttgacttggcacaatca-agttctctggtttaggacctaacaaattggaaacccagtt 239
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccttgacttggcacaat-agagttctctggtttaggacctaacaaattggaaacccagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no335_m10.g1 MSMg01no335_m10.g1 CHROMAT_FILE:
MSMg01no335_m10.g1 PHD_FILE: MSMg01no335_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:39 2005
(569 letters)
>mm_chr3_122703985_122704953
Length = 969
Score = 949 bits (491), Expect = 0.0
Identities = 552/581 (95%), Gaps = 14/581 (2%)
Strand = Plus / Plus
Query: 1 ccagaattagtaagtctgctggtccagctgtgtcctgcactgacaagttcaagaagttct 60
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 201 ccagaattaataagtctgctggtccagctgtgccctgcacggacaagttcaagaagttct 260
Query: 61 ttgcatactcaagactggacattgtgctcttcattagactttgaatcggttgcctctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgcatactcaagactggacattgtgctcttcattagactttgaatcagttgcctctgtt 320
Query: 121 tctgggctactaaaatatttatcaatggatctacatagaaaacgtaaaatcttaactgga 180
|| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct: 321 tccgggctactaaaatatttatcagtggatctatatagaaaatgtaaaatcttaactgga 380
Query: 181 tgcagtatgttgtcattttgactaacatattaatcaccaagtacttgcacatgttgattt 240
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tgcagtatgtggtcattttggctaacatattaatcaccaagtacttgtacatgttgattt 440
Query: 241 cagagatgtaaattattaactctgtgagtgctggagggggtgcaaatggcaacagccact 300
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagagatggaaattattaactctgtgagtgctggagggggtgcaaatggcagcagccact 500
Query: 301 at--------------aggtttctcaaaaagctggaagtagatctgcaaatgccagctat 346
|| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggaaatcagtgtgcaggtttctcaaaaagctggaagtagatctgcaaatgccagctat 560
Query: 347 accactcttgggtagataccccaaagaccttgctacagaggtacctgctcattcctgagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accactcttgggtagataccccaaagaccttgctacagaggtacctgctcattcctgagc 620
Query: 407 tgagctaatctattcacaatagccaggacatggaaacagtttagatgtccaccaactgaa 466
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 tgagctaatctattcacaataaccaggacatggaaacagcttagatgtccaccaactgaa 680
Query: 467 gagtggccagtgaagatgtagtattttcatacactagattatcattcagctattaggaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtggccagtgaagatgtagtattttcatacactagattatcattcagctattaggaaa 740
Query: 527 aatgaaatttttaggcaaatggatataactggaaatagtca 567
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgaaatttttaggcaaatggatataactggaaatagtca 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
