BAC Information

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BAC

Clone NameMSMg01-335P12
Chromosome3 (Build37)
Map Location 142,805,531 - 142,984,163
singlet/doubletdoublet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335P12.T7 (MSMg01no335_p12.b1)MSMg01-335P12.TJ (MSMg01no335_p12.g1)
ACCAG451100AG451101
length739737
length of high quality
(start - end)
448 (31 - 478)430 (66 - 495)
definitionCHROMAT_FILE: MSMg01no335_p12.b1 PHD_FILE: MSMg01no335_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:55 2005CHROMAT_FILE: MSMg01no335_p12.g1 PHD_FILE: MSMg01no335_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,983,722 - 142,984,163)(142,805,531 - 142,805,960)
sequence
GGCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCCAGGATT
TATGTTACTATTATAGAAAATCTCATTTTGACTATAGCACCAACATTACC
TAATAAATGACTTCAAGATGCTGGAAAGAAATTTGGCCAAGACAAATAGG
TGTTCGACAAGGTTTCCCCAGCACACTCATTTTGCTATATGGAAAATGAA
CTGACCAAGTTTAATGTACACCCAGTGAAATTTGGAAGCACGGTCTAATG
CTTTCTGAACAGTACCTGAAGTGAGCAGTTTTTGATTTCCCCGCTTCCTC
CTCTAATGTGTATTCTCAACAAAATGGCCAACCTAATCCTCTAGAACAAA
TACCATACCACAGCACTCCTCTGCTCACAGCCCTTCCATGCCTCAGAGCC
CTGACTGGTAAGCAGAGTCCACTCTATTGGACCTTTATAAGGAATCCTTA
CCCTCTTGGTCACTAATTTTCCAGCACAGTGGTCACACCGTTTTTCTAAT
ATAGCCTGCACAGAAAAACCACGTGATATCTGTACAATCCATGCTTCTGA
CAATAGCATCCTTCTTCTCACTGTCTACAAGGTCAGTTAAAACTTTGTTC
CCCTGATCTTTTGCTTGAAAGTCCAACCCTTTTCCACGAACTCTTATTTT
CTTTCTCCCACCTTTTCCCCCACTCCTATAACCCTGTTTCCCCTTTTGAA
AACCCTTTCTTGGGGCATCAATTCTTTTCCCCAAACATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTTTCTGTGGAGGCTGCTTCTTTTCCCAGCGTAG
CAAGTAGAAAGGAAACAAAAGCCTGTTTTTAATTCTGTAGACAGTGACAT
GAAAATTACATCTGAATGGAGTTTAAGGAACGGTGACAAGTTTGCAGAAT
GTCAGACTATGACAAAGGATCACAAATTTCCAATGTCTGAATTTTATAGC
TCTGCAGATACAAATGTCAGAAAAAAATGATTGCTCTGGACAGCAGAGTC
AACATCGCTCTTCAGTCGTATTGTGTTTACTGTATGGCGACTAATGAAGA
GCTTCCAGGCCCTGGAGGATTTCAGTTTTGTCAAGTGAGAAGAAGTCATG
ATGTGTATAATCACGGGGTCAAGATGGAATAAGGCAACTCCATTATGTAC
CGCAACTAAACACCATCTAAAACTTTCAAACTCACTATGCCTTATGTTTG
TCTCAAATAAAAGCATCACATTGAATTTAGAGTCAACTGCTAGGGCTGCT
GGACTTGATTATATAAATGGAGTCTTGGCCTGCTTTTCACTCCTTGAATG
ACCTTGGATAAGTTATATTAAACTCTTTGAGCCTTATCCCTGTTATTTGA
AAACCGTAAATCATATTGTCCCGCCTTGTAAAACCGGCATGTGCATTAAA
TTGATATGCTGCCCTTGATGCCTCCGGATCTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_p12.b1 MSMg01no335_p12.b1 CHROMAT_FILE:
MSMg01no335_p12.b1 PHD_FILE: MSMg01no335_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:55 2005
         (448 letters)



>mm_chr3_142983712_142984559
          Length = 848

 Score =  847 bits (438), Expect = 0.0
 Identities = 441/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattccaggatttatgttactattatagaaaatctcattttgactatagcaccaacat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggaattccaggatttatgttactattatagaaaatctcattttgactatagcaccaacat 393

                                                                       
Query: 67  tacctaataaatgacttcaagatgctggaaagaaatttggccaagacaaataggtgttcg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tacctaataaatgacttcaagatgctggaaagaaatttggccaagacaaataggtgttcg 333

                                                                       
Query: 127 acaaggtttccccagcacactcattttgctatatggaaaatgaactgaccaagtttaatg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acaaggtttccccagcacactcattttgctatatggaaaatgaactgaccaagtttaatg 273

                                                                       
Query: 187 tacacccagtgaaatttggaagcacggtctaatgctttctgaacagtacctgaagtgagc 246
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 272 tacacccagtgaaatttggaagcatggtctaatgctttctgaacagtacctgaagtgagc 213

                                                                       
Query: 247 agtttttgatttccccgcttcctcctctaatgtgtattctcaacaaaatggccaacctaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 agtttttgatttccccgcttcctcctctaatgtgtattctcaacaaaatggccaacctaa 153

                                                                       
Query: 307 tcctctagaacaaataccataccacagcactcctctgctcacagcccttccatgcctcag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tcctctagaacaaataccataccacagcactcctctgctcacagcccttccatgcctcag 93

                                                                       
Query: 367 agccctgactggtaagcagagtccactctattggacctttataaggaatccttaccctct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  agccctgactggtaagcagagtccactctattggacctttataaggaatccttaccctct 33

                                 
Query: 427 tggtcactaattttccagcaca 448
           ||||||||||||||||||||||
Sbjct: 32  tggtcactaattttccagcaca 11


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_p12.g1 MSMg01no335_p12.g1 CHROMAT_FILE:
MSMg01no335_p12.g1 PHD_FILE: MSMg01no335_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:55 2005
         (430 letters)



>mm_chr3_142805331_142806160
          Length = 830

 Score =  808 bits (418), Expect = 0.0
 Identities = 427/430 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttctgtggaggctgcttcttttcccagcgtagcaagtagaaaggaaacaaaagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttctgtggaggctgcttcttttcccagcgtagcaagtagaaaggaaacaaaagcctg 260

                                                                       
Query: 61  tttttaattctgtagacagtgacatgaaaattacatctgaatggagtttaaggaacggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tttttaattctgtagacagtgacatgaaaattacatctgaatggagtttaaggaatggtg 320

                                                                       
Query: 121 acaagtttgcagaatgtcagactatgacaaaggatcacaaatttccaatgtctgaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagtttgcagaatgtcagactatgacaaaggatcacaaatttccaatgtctgaatttt 380

                                                                       
Query: 181 atagctctgcagatacaaatgtcagaaaaaaatgattgctctggacagcagagtcaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagctctgcagatacaaatgtcagaaaaaaatgattgctctggacagcagagtcaacat 440

                                                                       
Query: 241 cgctcttcagtcgtattgtgtttactgtatggcgactaatgaagagcttccaggccctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgctcttcagtcgtattgtgtttactgtatggcgactaatgaagagcttccaggccctgg 500

                                                                       
Query: 301 aggatttcagttttgtcaagtgagaagaagtcatgatgtgtataatcacggggtcaagat 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aggatttcagttttgtcaagtgagaagaagtcatgatgtgtataatcatggggtcaagat 560

                                                                       
Query: 361 ggaataaggcaactccattatgtaccgcaactaaacaccatctaaaactttcaaactcac 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaataaggcaactccattatgtactgcaactaaacaccatctaaaactttcaaactcac 620

                     
Query: 421 tatgccttat 430
           ||||||||||
Sbjct: 621 tatgccttat 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)