CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAT
TCCTGATTTGACCAGATGCTTTAAATAATCCCAAAACTATTTTCTACCTT
ACCCACCACATTTTGCCATATACTATGTGAAACTTAGGGGAGGCAAGGGA
TTACATGATCTTAAGGGTTTTAAGGGCCCCCACCCGGGTCAAACCCACCT
TTTTTTGGTACAAAAAAGGGGCTTTAACCCTTTTGGGGAAAAAGGCTTCT
CTTTTTTAAAAAAAAAAAAAAATGGGGCGAAAATGAAAAATTTTGGGGGG
GGTTTGTCCCCCTTCCGGGGGAAAAAAACCCCCAACCCCCCGGGGGGGGG
GGAAAGGGTGGTTTTTTTTTTTTCTGGGGTGCTCTTCTTCGGGGGGGGAA
AAACTTTTCCACACCCCTCCTTTTTTTTTTCCCTTTTTGTGAGGAAAAAA
AAAAACCCTCCCCGCCGCGGGTTGTTTTTTTATAAATAAAACCACTTCTT
TGGGGGGGGGGGGCCCTCTCCTTAATAAAAACCCCCTCTCCCCCCCCGGG
GGGGGGGGGGGGGGTCCCCCACCTTCTGTG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACCCTCTGGTCGGGCAGGGTTCCTTTGTCCCT
CTTCCTGCTGGCACAAGAACCTCCGGGATTCTTTGGAACTGATATCTCTT
TCCACTCACCAGTGATCCTGAGGCCCTGGGTGTGCTTGGGGACCTATGGC
ATGGAGAGTCCTCCGCGGACTTTTGGACCCTCTGCTGGTTTTGCGTGGAA
GATCCAATCTTTTTATTTGAGAGATTTATCCAGTTGAAACTGAGAGTTCT
ACTAGATCTGATAATGATCACTAACAGGAACAGAGATAATAGTGGCCAGT
TGTTTTCAAATAATTTATTTGCCCTTCACATTTGATATCGAGATATTTTA
ATACAACATATAAATTTTAGTGTATTATTTCATATTTCCCATTTCATGTG
ATTTTATATTTTTCTGTGGACCAGAAGATGCTGACTTTTTGGACAATTAG
ATGTTTGTTGAAGTGTGGAGGCTTGGAACAAAAGGTGACAATTATGAATG
TCTTGGGTTATGGGGAACCATTCTGAAACACTGACCAGCACTGGGGAGAC
TCTGGATCCATACGTTCAGGACTGAGATGATTGACACCCATACTCAGTTG
AACCTCCAGTATGCATCATCTCTAACTGGCAGCCAAACTATCACATTCAT
AAGTGTGAGTATCACCCTATCTCTTTCTCGAAGA

Query= MSMg01no336_a08.g1 MSMg01no336_a08.g1 CHROMAT_FILE:
MSMg01no336_a08.g1 PHD_FILE: MSMg01no336_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:59 2005
         (558 letters)



>mm_chr3_5545550_5546513
          Length = 964

 Score =  934 bits (483), Expect = 0.0
 Identities = 536/557 (96%), Gaps = 6/557 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   cctctggtcgggcagggttcctttgtccctcttcctgctggcacaagaacctccgggatt 63
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 204 cctctggtcgggcagggttcctttgtccctcttcctgctggcacaagaccctccaggatt 263

                                                                       
Query: 64  ctttggaactgatatctctttccactcaccagtgatcctgaggccctgggtgtgcttggg 123
           |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 264 ctttggaactgatatctctttccactcaccagtgatcccgaagccctaggtgtgcttggg 323

                                                                       
Query: 124 gacctatggcatggagagtcctccgcggacttttggaccctctgctggttttgcgtggaa 183
           | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 gccctatggcatggagagtcctcctcggacttttggaccctctgctggttttgcgtggaa 383

                                                                       
Query: 184 gatccaatctttttatttgagagatttatccagttgaaactgagagttctactagatctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatccaatctttttatttgagagatttatccagttgaaactgagagttctactagatctg 443

                                                                       
Query: 244 ataatgatcactaacaggaacagagataatagtggccag------ttgttttcaaataat 297
           | |||||||||||||||||||||||||||| ||||||||      |||||||||||||||
Sbjct: 444 agaatgatcactaacaggaacagagataatggtggccagaagcctttgttttcaaataat 503

                                                                       
Query: 298 ttatttgcccttcacatttgatatcgagatattttaatacaacatataaattttagtgta 357
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 504 ttatttgcccttcacatttgatatagagatattttaatacaacatataatttttagtgta 563

                                                                       
Query: 358 ttatttcatatttcccatttcatgtgattttatatttttctgtggaccagaagatgctga 417
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatttcatatttcccatttcatatgattttatatttttctgtggaccagaagatgctga 623

                                                                       
Query: 418 ctttttggacaattagatgtttgttgaagtgtggaggcttggaacaaaaggtgacaatta 477
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctttttggacaattggatgtttgttgaagtgtggaggcttggaacaaaaggtgacaatta 683

                                                                       
Query: 478 tgaatgtcttgggttatggggaaccattctgaaacactgaccagcactggggagactctg 537
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaatgccttgggttgtggggaaccattctgaaacactgaccagcactggggagactctg 743

                            
Query: 538 gatccatacgttcagga 554
           |||||||||||||||||
Sbjct: 744 gatccatacgttcagga 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 964
Length adjustment: 10
Effective length of query: 548
Effective length of database: 954
Effective search space:   522792
Effective search space used:   522792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)