XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTATTTCTAAATGCACTTGAACTATTTCAAAATGTGTCAAAAAATCAGA
AATGTTCACCAATTTTTAATGAGCTCAGCATAATAATGATTTCCACACTG
GTAAGATAGTTGATAAAGTTATATGCTTTCTCAGAACACCAAATCTTTAA
TTGTGTATTAGCAAGTCAACTTCAGAAGCTCCAAAGAGTAAATTTTATAT
TAAAATAAATCATGGGTACTCCAAAACCACAAACTTATTTTGATATTTTT
AAACATTTGCCTGCTTCAATAATCCAAAAACAAGAAACCACCCCCTATTA
ATAAATAATATGAAAATATATCTTTAGGCTTTGTCATAAGTGTCTGCCAC
TCTCCAACAGCCTTGCTTGATACCAAAGCTCTTCCCATATATGTTTTTGG
AGAAACAAGATTCAAATCAAATTCTGTGTATACACATCACACACACACAC
ACACACACACACACACACACACATACACACACACACACACACACACAAAT
TATCGGGACTCCAACCATCTCCATATATCTCCACTATCATAACTGTTCAA
ACAGTTGCCCCAATGTCCAAATCCGAAATCTTCTCTGAGGAAAGAAAAAG
CCACTTGGGAGTCTTTGTGAGAACAAAGCAACCATAAAAGGCCAACCAGT
TGTACAGACAAATACAGAGTATTCTCATTGCAA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCATGATAGAAGTTCTTCAGAGACCTGGG
CTATAAGGCTCATACCTAAATATAATAAAAGCAATTTATAGCAAACCTGT
ATCCAACATCAAATTAACTGGAGAGAAACACAAAACAATTCCACTAAAAT
CATGAATAAGGTGAGGCTGGCCACTCTCTTCATATCACTTCAGTAAAGTA
ATTGAAGTTTTAGCTAGAACAATAAGACAATTATAGTGATCAAAGGGATA
TAATTTATAAAGTATTAAGTCAGAGTATCCTTATTTGAAGGTGATATGAC
AGTATACTTCAGTGACCCTAAAAGGTTCACAAAGAAACACCTACAGCTGC
TAAACATTTTCAGTAAAGTAGATTGAAGCAGTGACTTCTGGTTTCTTTGG
AGACTCAGTTGTGTCATATGATGTTTTTCTGAAAACTATTTTAAGAGATT
ATGAGAGGATGTGTTAGCTGAAGAAGAAACATGGGAGGATGTTTTGTTAA
GAACAGACATGTGGTGCTTTTCTGGAGATTGCTTGGAAAACAAGGGCATT
TGATGGTATTTTCAAACTGGCTATTTTATTTATTTATATTTCAAATATTG
TCCCACTTCCCGGTCTTCCTCCACAAACCCCCTCCTATCTCCTGTCCCCT
TTGTCTCCAAAAGGGTGCTCTCCCACCCC

Query= MSMg01no336_c10.b1 MSMg01no336_c10.b1 CHROMAT_FILE:
MSMg01no336_c10.b1 PHD_FILE: MSMg01no336_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:08 2005
         (565 letters)



>mm_chr3_42303686_42304650
          Length = 965

 Score = 1042 bits (539), Expect = 0.0
 Identities = 559/573 (97%), Gaps = 12/573 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctatttctaaatgcacttgaactatttcaaaatgtgtcaaaaaatcagaaatgt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaattcctatttccaaatgcacttgaactatttcaaaatgtgtcaaaaaatcagaaatgt 796

                                                                       
Query: 65  tcaccaatttttaatgagctcagcataataatgatttccacactggtaagatagttgata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcaccaatttttaatgagctcagcataataatgatttccacactggtaagatagttgata 736

                                                                       
Query: 125 aagttatatgctttctcagaacaccaaatctttaattgtgtattagcaagtcaacttcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aagttatatgctttctcagaacaccaaatctttaattgtgtattagcaagtcaacttcag 676

                                                                       
Query: 185 aagctccaaagagtaaattttatattaaaataaatcatgggtactccaaaaccacaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aagctccaaagagtaaattttatattaaaataaatcatgggtactccaaaaccacaaact 616

                                                                       
Query: 245 tattttgatatttttaaacatttgcctgcttcaataatccaaaaacaagaaaccaccccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tattttgatatttttaaacatttgcctgcttcaataatccaaaaacaagaaaccaccccc 556

                                                                       
Query: 305 tattaataaataatatgaaaatatatctttaggctttgtcataagtgtctgccactctcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tattaataaataatatgaaaatatatctttaggctttgtcataagtgtctgccactctcc 496

                                                                       
Query: 365 aacagccttgcttgataccaaagctcttcccatatatgtttttggagaaacaagattcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aacagccttgcttgataccaaagctcttcccatatatgtttttggagaaacaagattcaa 436

                                                                       
Query: 425 atcaaattctgtgtatacacatcacacacacacacacacacacacacacacaca------ 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 435 atcaaattctgtgtatacacatcacacacacacacacacacacacacacacacatacaca 376

                                                                       
Query: 479 ------cacatacacacacacacacacacacacaaattatcgggactccaaccatctcca 532
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cacacacacacacacacacacacacacacacacaaattatcgggactccaaccatctcca 316

                                            
Query: 533 tatatctccactatcataactgttcaaacagtt 565
           |||||||||||||||||||||||||||||||||
Sbjct: 315 tatatctccactatcataactgttcaaacagtt 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)