XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAAGATTCCTTTGGTCCCTGGAATGAAGTTAAAGGTCCCTCTGTAGGTTT
AGAGAGGTCAAAAGGCTCTTCTGTGGAAAGGGAAGATCCAAAAGGCTTAG
GGAAGAAAGTGAGGAACTAAGTTGGGCAGAAATTGCAAGTTCCAGAGGTG
AGTCATTGGATATCACATGTCCTGGGGTAGCTGTTGAAAATTTTTGTGCT
CCTCATGCAAATGATGAATATCCTAGAGCCCCCTGGGGAGGCAGCAATGT
TTCTACAGAGCCTGTGTATTTGCTGAAATCCTCAGAGATCCCTGGTCAGA
TCTCAAAATCCTTGCTGTATTTTGAGCAGGGTGGTTATATCCCTGACACA
CTGGTAAAGATGGTGAGTCTGCTACTGTGTAGTGTGTAGATGTGGAGTGA
GTTCCTATACCTTGTGTATGTAAAGAAGTACTTGAAAACCTTTTGGAAGA
TGTAGAATGTTGGGTAGACCTTTGTGGACATGTGGACAGATGTATGGTCC
CCTTGTGCAGAGACTGGGACTCACACCTCCTTGAGCAGAATCAGAAGATC
CTGGAGTCCTTTGTTCTGAGGATGAAAGACCCCCAGGATTATGAGAACAT
TCTTAGCATTGTGGAGGATTCATTCATTGCCCTGGGCTGAGAAAAAAAGT
TTCAAAGCCCCCTGGGCAAAATGCAAGGTGGCTAAAAACCCCTGGCCACA
N

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGGTCCATGTGTACTTTTAAGAATATTTA
TGAACACGAGAATTAGCCAACAATGAGAAGATAGTTGTAGTTCACTGACT
TGGACAAAGTGGTGTGGGCACAGTGGGAGAAATGTGCTGTCATGTGGCAT
TGCAGCAGACCAATGTAAAACCTCTGTGCACAGGCAGGGGACGGTGTGGC
TGAGGTCGGTCACCAGGCAAAGTTCTTTAGTTTCTGATGCTGAAATTGGT
AACCTTTTATTATTGTTTTTGAGATATTTGCAAAAGAAATTTGAGGATGT
TACAAATATACCTAAACTTGAATTCTTGGTTTTATAAATATTTAACAATT
AATATTTTCCCTACATAAAAACAACAATGCTTAAGCTGTGGCAAAACCAA
GAGTGAAATAAACTCTGTGAGACAGATGAGCATTTGTGCTTAGGGATGAG
GAAGTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCNNN
NNNTNANNNNTTTTTTTTNTNTTTCTTTTTTTTTTCCCCCTCCTTCTTTT
TTTCCTTCTTTTTCCCTTATTTCCTTTTTCCCCTTTTCTTTCCCTTCCCC
CTCCTTTTTCCCCCTCCCCCCCTTCTTTCTTCTTTTTTTTCCTCCTCTTT
TTCCCTCCCTTTCCCTCTCCTCCCTCTCCCTTCCTCCTC

Query= MSMg01no336_e11.g1 MSMg01no336_e11.g1 CHROMAT_FILE:
MSMg01no336_e11.g1 PHD_FILE: MSMg01no336_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:18 2005
         (471 letters)



>mm_chr3_25422515_25423385
          Length = 871

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggtccatgtgtacttttaagaatatttatgaacacgagaattagccaacaatgagaa 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 510 caaggtccatgtgtacttttaagaatatttatgaacacaagaattagccaacaatgagaa 451

                                                                       
Query: 61  gatagttgtagttcactgacttggacaaagtggtgtgggcacagtgggagaaatgtgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gatagttgtagttcactgacttggacaaagtggtgtgggcacagtgggagaaatgtgctg 391

                                                                       
Query: 121 tcatgtggcattgcagcagaccaatgtaaaacctctgtgcacaggcaggggacggtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcatgtggcattgcagcagaccaatgtaaaacctctgtgcacaggcaggggacggtgtgg 331

                                                                       
Query: 181 ctgaggtcggtcaccaggcaaagttctttagtttctgatgctgaaattggtaacctttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctgaggtcggtcaccaggcaaagttctttagtttctgatgctgaaattggtaacctttta 271

                                                                       
Query: 241 ttattgtttttgagatatttgcaaaagaaatttgaggatgttacaaatatacctaaactt 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atattgtttttgagatatttgcaaaagaaatttgaggatgttacaaatatacctaaactt 211

                                                                       
Query: 301 gaattcttggttttataaatatttaacaattaatattttccctacataaaaacaacaatg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 210 gaattcttggttttataaatatttaacaattaatattttccctatataaaaacaacaatg 151

                                                                       
Query: 361 cttaagctgtggcaaaaccaagagtgaaataaactctgtgagacagatgagcatttgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 cttaagctgtggcaaaaccaagagtgaaataaactctgtgagacagatgagcatttgtgc 91

                                                       
Query: 421 ttagggatgaggaagttactgtgtgtgtgtgtgtgtgtgtgtgt 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ttagggatgaggaagttactgtgtgtgtgtgtgtgtgtgtgtgt 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)